(5 nodes) Proteasome alpha-subunit, N-terminal domain, and Metalloprotease DUBs network (Emiliania huxleyi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R1CHT1_EMIHU	Proteasome subunit alpha type. (156 aa)
	R1D289_EMIHU	Proteasome subunit alpha type. (264 aa)
	R1E1Z9_EMIHU	Proteasome subunit alpha type. (156 aa)
	R1F4L3_EMIHU	MPN domain-containing protein. (309 aa)
	R1FWA3_EMIHU	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (194 aa)

Your Current Organism:

Emiliania huxleyi

NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R1CHT1_EMIHU	R1D289_EMIHU	R1CHT1	R1D289	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
R1CHT1_EMIHU	R1E1Z9_EMIHU	R1CHT1	R1E1Z9	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.998
R1CHT1_EMIHU	R1F4L3_EMIHU	R1CHT1	R1F4L3	Proteasome subunit alpha type.	MPN domain-containing protein.	0.997
R1CHT1_EMIHU	R1FWA3_EMIHU	R1CHT1	R1FWA3	Proteasome subunit alpha type.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.998
R1D289_EMIHU	R1CHT1_EMIHU	R1D289	R1CHT1	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
R1D289_EMIHU	R1E1Z9_EMIHU	R1D289	R1E1Z9	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
R1D289_EMIHU	R1F4L3_EMIHU	R1D289	R1F4L3	Proteasome subunit alpha type.	MPN domain-containing protein.	0.999
R1D289_EMIHU	R1FWA3_EMIHU	R1D289	R1FWA3	Proteasome subunit alpha type.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.999
R1E1Z9_EMIHU	R1CHT1_EMIHU	R1E1Z9	R1CHT1	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.998
R1E1Z9_EMIHU	R1D289_EMIHU	R1E1Z9	R1D289	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
R1E1Z9_EMIHU	R1F4L3_EMIHU	R1E1Z9	R1F4L3	Proteasome subunit alpha type.	MPN domain-containing protein.	0.999
R1E1Z9_EMIHU	R1FWA3_EMIHU	R1E1Z9	R1FWA3	Proteasome subunit alpha type.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.999
R1F4L3_EMIHU	R1CHT1_EMIHU	R1F4L3	R1CHT1	MPN domain-containing protein.	Proteasome subunit alpha type.	0.997
R1F4L3_EMIHU	R1D289_EMIHU	R1F4L3	R1D289	MPN domain-containing protein.	Proteasome subunit alpha type.	0.999
R1F4L3_EMIHU	R1E1Z9_EMIHU	R1F4L3	R1E1Z9	MPN domain-containing protein.	Proteasome subunit alpha type.	0.999
R1F4L3_EMIHU	R1FWA3_EMIHU	R1F4L3	R1FWA3	MPN domain-containing protein.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.999
R1FWA3_EMIHU	R1CHT1_EMIHU	R1FWA3	R1CHT1	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	Proteasome subunit alpha type.	0.998
R1FWA3_EMIHU	R1D289_EMIHU	R1FWA3	R1D289	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	Proteasome subunit alpha type.	0.999
R1FWA3_EMIHU	R1E1Z9_EMIHU	R1FWA3	R1E1Z9	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	Proteasome subunit alpha type.	0.999
R1FWA3_EMIHU	R1F4L3_EMIHU	R1FWA3	R1F4L3	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	MPN domain-containing protein.	0.999