(30 nodes) Cytosolic small ribosomal subunit network (Emiliania huxleyi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R1D344_EMIHU	Ribosomal_S17_N domain-containing protein. (163 aa)
	R1FEL1_EMIHU	HMG box domain-containing protein. (349 aa)
	R1FDV2_EMIHU	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (206 aa)
	R1F2M9_EMIHU	S10_plectin domain-containing protein. (126 aa)
	R1EUC2_EMIHU	S10_plectin domain-containing protein. (166 aa)
	R1ERC3_EMIHU	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (206 aa)
	R1EIT6_EMIHU	S10_plectin domain-containing protein. (170 aa)
	R1EHT6_EMIHU	Uncharacterized protein. (130 aa)
	R1EGX6_EMIHU	Uncharacterized protein. (136 aa)
	R1EE29_EMIHU	Ribosomal_S17_N domain-containing protein. (137 aa)
	R1E937_EMIHU	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (244 aa)
	R1E604_EMIHU	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (107 aa)
	R1E369_EMIHU	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (283 aa)
	R1DZL0_EMIHU	Uncharacterized protein. (146 aa)
	R1DWT8_EMIHU	Uncharacterized protein. (128 aa)
	R1DU69_EMIHU	KH type-2 domain-containing protein. (135 aa)
	R1DLA2_EMIHU	Uncharacterized protein. (217 aa)
	R1DH32_EMIHU	Uncharacterized protein. (398 aa)
	R1D8W1_EMIHU	S10_plectin domain-containing protein. (171 aa)
	R1D6R5_EMIHU	KH type-2 domain-containing protein. (229 aa)
	R1CXH0_EMIHU	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (68 aa)
	R1CME4_EMIHU	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (59 aa)
	R1CHH1_EMIHU	Uncharacterized protein. (313 aa)
	R1CH68_EMIHU	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (143 aa)
	R1C8J6_EMIHU	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (248 aa)
	R1BJY4_EMIHU	eIF2A domain-containing protein. (430 aa)
	R1BFR6_EMIHU	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (276 aa)
	R1BDA5_EMIHU	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	R1B4C7_EMIHU	Uncharacterized protein. (442 aa)
	R1B4B9_EMIHU	Ribosom_S30AE_C domain-containing protein. (250 aa)

Your Current Organism:

Emiliania huxleyi

NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R1B4B9_EMIHU	R1B4C7_EMIHU	R1B4B9	R1B4C7	Ribosom_S30AE_C domain-containing protein.	Uncharacterized protein.	0.922
R1B4B9_EMIHU	R1BDA5_EMIHU	R1B4B9	R1BDA5	Ribosom_S30AE_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.943
R1B4B9_EMIHU	R1CHH1_EMIHU	R1B4B9	R1CHH1	Ribosom_S30AE_C domain-containing protein.	Uncharacterized protein.	0.922
R1B4B9_EMIHU	R1D344_EMIHU	R1B4B9	R1D344	Ribosom_S30AE_C domain-containing protein.	Ribosomal_S17_N domain-containing protein.	0.900
R1B4B9_EMIHU	R1D6R5_EMIHU	R1B4B9	R1D6R5	Ribosom_S30AE_C domain-containing protein.	KH type-2 domain-containing protein.	0.920
R1B4B9_EMIHU	R1DU69_EMIHU	R1B4B9	R1DU69	Ribosom_S30AE_C domain-containing protein.	KH type-2 domain-containing protein.	0.920
R1B4B9_EMIHU	R1E369_EMIHU	R1B4B9	R1E369	Ribosom_S30AE_C domain-containing protein.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.904
R1B4B9_EMIHU	R1EE29_EMIHU	R1B4B9	R1EE29	Ribosom_S30AE_C domain-containing protein.	Ribosomal_S17_N domain-containing protein.	0.900
R1B4B9_EMIHU	R1EGX6_EMIHU	R1B4B9	R1EGX6	Ribosom_S30AE_C domain-containing protein.	Uncharacterized protein.	0.980
R1B4C7_EMIHU	R1B4B9_EMIHU	R1B4C7	R1B4B9	Uncharacterized protein.	Ribosom_S30AE_C domain-containing protein.	0.922
R1B4C7_EMIHU	R1BDA5_EMIHU	R1B4C7	R1BDA5	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.973
R1B4C7_EMIHU	R1BFR6_EMIHU	R1B4C7	R1BFR6	Uncharacterized protein.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.556
R1B4C7_EMIHU	R1C8J6_EMIHU	R1B4C7	R1C8J6	Uncharacterized protein.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.556
R1B4C7_EMIHU	R1CH68_EMIHU	R1B4C7	R1CH68	Uncharacterized protein.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.495
R1B4C7_EMIHU	R1CME4_EMIHU	R1B4C7	R1CME4	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.895
R1B4C7_EMIHU	R1D344_EMIHU	R1B4C7	R1D344	Uncharacterized protein.	Ribosomal_S17_N domain-containing protein.	0.902
R1B4C7_EMIHU	R1D6R5_EMIHU	R1B4C7	R1D6R5	Uncharacterized protein.	KH type-2 domain-containing protein.	0.919
R1B4C7_EMIHU	R1DLA2_EMIHU	R1B4C7	R1DLA2	Uncharacterized protein.	Uncharacterized protein.	0.556
R1B4C7_EMIHU	R1DU69_EMIHU	R1B4C7	R1DU69	Uncharacterized protein.	KH type-2 domain-containing protein.	0.919
R1B4C7_EMIHU	R1DWT8_EMIHU	R1B4C7	R1DWT8	Uncharacterized protein.	Uncharacterized protein.	0.556