(18 nodes) ER to Golgi transport vesicle membrane network (Emiliania huxleyi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R1DC77_EMIHU	Uncharacterized protein. (508 aa)
	R1DBN4_EMIHU	WD_REPEATS_REGION domain-containing protein. (313 aa)
	SEC23A	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (661 aa)
	SEC24B	Secretory protein 24B. (1076 aa)
	R1CRJ0_EMIHU	SSD domain-containing protein. (1027 aa)
	R1FAB7_EMIHU	Uncharacterized protein. (131 aa)
	SEC24A	Secretory protein 24A. (1030 aa)
	R1F602_EMIHU	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (562 aa)
	Sar1a-2	Sar1 GTPase; Belongs to the small GTPase superfamily. SAR1 family. (191 aa)
	SEC23B	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (537 aa)
	Sar1b	Sar1 GTPase; Belongs to the small GTPase superfamily. SAR1 family. (252 aa)
	R1ELV3_EMIHU	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (199 aa)
	R1EHZ6_EMIHU	Uncharacterized protein. (1022 aa)
	Sar1c	Sar1 GTPase with a very long N-terminal extension. (841 aa)
	R1E860_EMIHU	WD_REPEATS_REGION domain-containing protein. (662 aa)
	SEC31	Secretory protein 31. (1166 aa)
	SEC23C	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (675 aa)
	R1DD12_EMIHU	Uncharacterized protein. (100 aa)

Your Current Organism:

Emiliania huxleyi

NCBI taxonomy Id: 2903
Other names: E. huxleyi, Emiliania huxleyi (Lohmann) W.W.Hay & H.P.Mohler, Gephyrocapsa huxleyi, Pontosphaera huxleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R1DBN4_EMIHU	R1ELV3_EMIHU	R1DBN4	R1ELV3	WD_REPEATS_REGION domain-containing protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.862
R1DBN4_EMIHU	R1F602_EMIHU	R1DBN4	R1F602	WD_REPEATS_REGION domain-containing protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.862
R1DBN4_EMIHU	R1FAB7_EMIHU	R1DBN4	R1FAB7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.932
R1DBN4_EMIHU	SEC23A	R1DBN4	R1D8V5	WD_REPEATS_REGION domain-containing protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.862
R1DBN4_EMIHU	SEC23B	R1DBN4	R1EXC0	WD_REPEATS_REGION domain-containing protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.862
R1DBN4_EMIHU	SEC23C	R1DBN4	R1DIS8	WD_REPEATS_REGION domain-containing protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.862
R1DBN4_EMIHU	SEC24A	R1DBN4	R1F9V3	WD_REPEATS_REGION domain-containing protein.	Secretory protein 24A.	0.932
R1DBN4_EMIHU	SEC24B	R1DBN4	R1D275	WD_REPEATS_REGION domain-containing protein.	Secretory protein 24B.	0.889
R1DBN4_EMIHU	Sar1a-2	R1DBN4	R1F2D0	WD_REPEATS_REGION domain-containing protein.	Sar1 GTPase; Belongs to the small GTPase superfamily. SAR1 family.	0.867
R1DBN4_EMIHU	Sar1b	R1DBN4	R1EQC4	WD_REPEATS_REGION domain-containing protein.	Sar1 GTPase; Belongs to the small GTPase superfamily. SAR1 family.	0.867
R1DBN4_EMIHU	Sar1c	R1DBN4	R1EDK2	WD_REPEATS_REGION domain-containing protein.	Sar1 GTPase with a very long N-terminal extension.	0.867
R1DD12_EMIHU	R1ELV3_EMIHU	R1DD12	R1ELV3	Uncharacterized protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.862
R1DD12_EMIHU	R1F602_EMIHU	R1DD12	R1F602	Uncharacterized protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.862
R1DD12_EMIHU	R1FAB7_EMIHU	R1DD12	R1FAB7	Uncharacterized protein.	Uncharacterized protein.	0.932
R1DD12_EMIHU	SEC23A	R1DD12	R1D8V5	Uncharacterized protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.862
R1DD12_EMIHU	SEC23B	R1DD12	R1EXC0	Uncharacterized protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.862
R1DD12_EMIHU	SEC23C	R1DD12	R1DIS8	Uncharacterized protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.862
R1DD12_EMIHU	SEC24A	R1DD12	R1F9V3	Uncharacterized protein.	Secretory protein 24A.	0.932
R1DD12_EMIHU	SEC24B	R1DD12	R1D275	Uncharacterized protein.	Secretory protein 24B.	0.889
R1DD12_EMIHU	Sar1a-2	R1DD12	R1F2D0	Uncharacterized protein.	Sar1 GTPase; Belongs to the small GTPase superfamily. SAR1 family.	0.867