STRINGSTRING
CKO_00105 CKO_00105 CKO_02157 CKO_02157 CKO_02218 CKO_02218 CKO_02219 CKO_02219 CKO_02220 CKO_02220 CKO_02221 CKO_02221 CKO_02222 CKO_02222 CKO_02223 CKO_02223 CKO_02224 CKO_02224 CKO_02225 CKO_02225 CKO_02226 CKO_02226 CKO_02227 CKO_02227 CKO_02228 CKO_02228 CKO_02229 CKO_02229 CKO_02230 CKO_02230 CKO_02232 CKO_02232 CKO_02233 CKO_02233 CKO_02234 CKO_02234 CKO_02718 CKO_02718 CKO_03268 CKO_03268 CKO_03269 CKO_03269 CKO_03270 CKO_03270 CKO_04698 CKO_04698 CKO_04741 CKO_04741 CKO_04833 CKO_04833
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CKO_00105Hypothetical protein; KEGG: eci:UTI89_C4322 4.0e-231 yifB; putative 2-component regulator K07391; COG: COG0606 Predicted ATPase with chaperone activity; Psort location: Cytoplasmic, score:8.96. (506 aa)
CKO_02157Hypothetical protein; KEGG: xac:XAC1087 0.0012 gloB; hydroxyacylglutathione hydrolase K01069; COG: COG0658 Predicted membrane metal-binding protein; Psort location: CytoplasmicMembrane, score:10.00. (754 aa)
CKO_02218Hypothetical protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (265 aa)
CKO_02219Hypothetical protein; COG: COG3149 Type II secretory pathway, component PulM. (161 aa)
CKO_02220Hypothetical protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (381 aa)
CKO_02221Hypothetical protein; COG: COG3156 Type II secretory pathway, component PulK. (338 aa)
CKO_02222Hypothetical protein; COG: COG4795 Type II secretory pathway, component PulJ. (221 aa)
CKO_02223Hypothetical protein; COG: COG2165 Type II secretory pathway, pseudopilin PulG. (126 aa)
CKO_02224Hypothetical protein; COG: COG2165 Type II secretory pathway, pseudopilin PulG. (161 aa)
CKO_02225Hypothetical protein; COG: COG2165 Type II secretory pathway, pseudopilin PulG. (149 aa)
CKO_02226Hypothetical protein; COG: COG1459 Type II secretory pathway, component PulF; Psort location: CytoplasmicMembrane, score:10.00. (402 aa)
CKO_02227Hypothetical protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (492 aa)
CKO_02228Hypothetical protein; COG: COG1450 Type II secretory pathway, component PulD; Psort location: OuterMembrane, score:10.00. (640 aa)
CKO_02229Hypothetical protein; KEGG: rme:Rmet_2422 0.0046 peptidase S1C, Do K04771; COG: COG3031 Type II secretory pathway, component PulC; Psort location: CytoplasmicMembrane, score:9.82. (257 aa)
CKO_02230Hypothetical protein. (47 aa)
CKO_02232Hypothetical protein. (50 aa)
CKO_02233Hypothetical protein. (525 aa)
CKO_02234Hypothetical protein; KEGG rha:RHA1_ro04199 0.0092 DNA polymerase III subunit K00961. (166 aa)
CKO_02718Hypothetical protein; KEGG: bur:Bcep18194_A5099 0.00019 RNA binding S1; COG: COG1555 DNA uptake protein and related DNA-binding proteins; Psort location: CytoplasmicMembrane, score:9.97. (124 aa)
CKO_03268COG: COG4969 Tfp pilus assembly protein, major pilin PilA; Belongs to the N-Me-Phe pilin family. (145 aa)
CKO_03269Hypothetical protein; KEGG: pen:PSEEN2333 1.7e-81 xcpR-2; type II secretion pathway protein E K01509; COG: COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; Psort location: Cytoplasmic, score:9.97. (473 aa)
CKO_03270Hypothetical protein; COG: COG1459 Type II secretory pathway, component PulF; Psort location: CytoplasmicMembrane, score:10.00. (400 aa)
CKO_04698Hypothetical protein; COG: COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake. (364 aa)
CKO_04741Hypothetical protein; KEGG: sec:SC3376 1.9e-59 hopD; leader peptidase HopD K02506; COG: COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases; Psort location: CytoplasmicMembrane, score:10.00; Belongs to the peptidase A24 family. (166 aa)
CKO_04833Hypothetical protein; KEGG: reh:H16_A0339 3.9e-27 predicted amidophosphoribosyltransferase; COG: COG1040 Predicted amidophosphoribosyltransferases. (243 aa)
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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