STRINGSTRING
CKO_00511 CKO_00511 CKO_04790 CKO_04790 CKO_04744 CKO_04744 CKO_04593 CKO_04593 CKO_03827 CKO_03827 CKO_03679 CKO_03679 CKO_03654 CKO_03654 CKO_03429 CKO_03429 erpA erpA CKO_02828 CKO_02828 CKO_02435 CKO_02435 bioB bioB CKO_02207 CKO_02207 hcp hcp CKO_01717 CKO_01717 CKO_01716 CKO_01716 CKO_01665 CKO_01665 CKO_01293 CKO_01293 CKO_01263 CKO_01263 CKO_00539 CKO_00539 CKO_00513 CKO_00513 CKO_00256 CKO_00256 CKO_00253 CKO_00253 iscS iscS iscR iscR ilvD ilvD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CKO_00511Hypothetical protein; KEGG: sty:STY2555 2.2e-88 nuoE; NADH dehydrogenase I chain E K00334; COG: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; Psort location: Cytoplasmic, score:9.26. (166 aa)
CKO_04790Hypothetical protein; KEGG: sfl:SF3385 3.8e-52 nirD; nitrite reductase (NAD(P)H) subunit K00363; COG: COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases; Psort location: Cytoplasmic, score:9.97. (108 aa)
CKO_04744KEGG: ppr:PBPRA2525 0.0043 hypothetical nitrate reductase large subunit K00372; COG: COG2906 Bacterioferritin-associated ferredoxin; Psort location: Cytoplasmic, score:8.96. (64 aa)
CKO_04593Hypothetical protein; COG: COG5007 Predicted transcriptional regulator, BolA superfamily; Belongs to the BolA/IbaG family. (97 aa)
CKO_03827Hypothetical protein; KEGG: eci:UTI89_C3737 1.8e-06 yhdM; Zn(II)-responsive regulator of ZntA; COG: COG0789 Predicted transcriptional regulators; Psort location: Cytoplasmic, score:8.96. (152 aa)
CKO_03679Hypothetical protein; KEGG: stm:STM4342 2.4e-130 frdB; fumarate reductase, anaerobic, Fe-S protein subunit K00245; COG: COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; Psort location: Cytoplasmic, score:8.96. (244 aa)
CKO_03654Hypothetical protein; COG: COG1959 Predicted transcriptional regulator. (125 aa)
CKO_03429Hypothetical protein; KEGG: gbe:GbCGDNIH1_2380 0.00064 ferric hydroxamate reductase FhuF K00521; COG: COG4114 Uncharacterized Fe-S protein; Psort location: Cytoplasmic, score:8.96. (262 aa)
erpAHypothetical protein; Required for insertion of 4Fe-4S clusters for at least IspG. (114 aa)
CKO_02828Hypothetical protein; KEGG: ecc:c0453 9.0e-250 prpD, mmgE; 2-methylcitrate dehydratase K01720; COG: COG2079 Uncharacterized protein involved in propionate catabolism. (486 aa)
CKO_02435Hypothetical protein; KEGG: spt:SPA2008 8.3e-128 sdhB; succinate dehydrogenase iron-sulfur protein K00240; COG: COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit. (238 aa)
bioBHypothetical protein; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (346 aa)
CKO_02207Hypothetical protein; KEGG: stm:STM0936 4.4e-154 hcr; NADH oxidoreductase for hcp gene product; COG: COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Psort location: Cytoplasmic, score:8.96. (311 aa)
hcpHypothetical protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. (562 aa)
CKO_01717Hypothetical protein; COG: COG0316 Uncharacterized conserved protein; Belongs to the HesB/IscA family. (122 aa)
CKO_01716Hypothetical protein; COG: COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component. (495 aa)
CKO_01665Hypothetical protein; KEGG: ama:AM1083 5.9e-08 grxC1; glutaredoxin 3 K03676; COG: COG0278 Glutaredoxin-related protein; Belongs to the glutaredoxin family. Monothiol subfamily. (115 aa)
CKO_01293Hypothetical protein; KEGG: eca:ECA2991 0. nasB; nitrite reductase [NAD(P)H] large subunit K00362; COG: COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases; Psort location: Cytoplasmic, score:9.26; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (1355 aa)
CKO_01263Hypothetical protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (183 aa)
CKO_00539Hypothetical protein; KEGG: ype:YPO3116 1.4e-08 ddhD, ascD, rfbI; CDP-6-deoxy-delta-3,4-glucoseen reductase K00523; COG: COG0633 Ferredoxin; Psort location: Cytoplasmic, score:8.96. (84 aa)
CKO_00513Hypothetical protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (911 aa)
CKO_00256Hypothetical protein; KEGG: eci:UTI89_C2847 7.5e-56 fdx; ferredoxin, 2Fe-2S K04755; COG: COG0633 Ferredoxin; Psort location: Cytoplasmic, score:8.96. (111 aa)
CKO_00253Hypothetical protein; COG: COG0316 Uncharacterized conserved protein; Psort location: Cytoplasmic, score:8.96; Belongs to the HesB/IscA family. (70 aa)
iscSHypothetical protein; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. (411 aa)
iscRHypothetical protein; Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins. (163 aa)
ilvDHypothetical protein; KEGG: eci:UTI89_C4327 0. ilvD; dihydroxy-acid dehydratase K01687; COG: COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; Belongs to the IlvD/Edd family. (602 aa)
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.