STRINGSTRING
dinB dinB AAur_1395 AAur_1395 AAur_0626 AAur_0626 AAur_0628 AAur_0628 AAur_4053 AAur_4053 AAur_3642 AAur_3642 AAur_3242 AAur_3242 AAur_3234 AAur_3234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
dinBPutative DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (384 aa)
AAur_1395Identified by match to protein family HMM PF00817. (400 aa)
AAur_0626Putative GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254. (392 aa)
AAur_0628Putative GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254. (472 aa)
AAur_4053Putative GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254. (400 aa)
AAur_3642Putative DNA polymerase IV; Identified by match to protein family HMM PF00817. (357 aa)
AAur_3242Putative GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254. (517 aa)
AAur_3234Response regulator/GGDEF domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254. (302 aa)
Your Current Organism:
Paenarthrobacter aurescens
NCBI taxonomy Id: 290340
Other names: Arthrobacter aurescens TC1, P. aurescens TC1, Paenarthrobacter aurescens TC1
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