STRINGSTRING
Jann_0648 Jann_0648 Jann_4021 Jann_4021 Jann_3565 Jann_3565 rpoD rpoD rpoH rpoH Jann_3134 Jann_3134 Jann_1890 Jann_1890 Jann_0906 Jann_0906 Jann_0842 Jann_0842
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Jann_0648Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (180 aa)
Jann_4021Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (127 aa)
Jann_3565Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (182 aa)
rpoDRNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (668 aa)
rpoHRNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. (298 aa)
Jann_3134RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. (194 aa)
Jann_1890Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (194 aa)
Jann_0906RNA polymerase, sigma 32 subunit, RpoH; Belongs to the sigma-70 factor family. (292 aa)
Jann_0842Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (200 aa)
Your Current Organism:
Jannaschia sp. CCS1
NCBI taxonomy Id: 290400
Other names: J. sp. CCS1
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