(8 nodes) Aminotransferase class-V network (Jannaschia sp. CCS1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Jann_2602	Serine-glyoxylate aminotransferase apoenzyme. (396 aa)
	Jann_1162	Aminotransferase class V. (398 aa)
	Jann_1241	Aminotransferase class V. (376 aa)
	Jann_2085	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively. (395 aa)
	Jann_2355	Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (407 aa)
	Jann_2365	Aminotransferase class V. (350 aa)
	Jann_4119	Aminotransferase. (400 aa)
	Jann_3472	Aminotransferase class V. (396 aa)

Your Current Organism:

Jannaschia sp. CCS1

NCBI taxonomy Id: 290400
Other names: J. sp. CCS1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Jann_1162	Jann_2602	Aminotransferase class V.	Serine-glyoxylate aminotransferase apoenzyme.	0.908
Jann_1162	Jann_3472	Aminotransferase class V.	Aminotransferase class V.	0.915
Jann_2355	Jann_2365	Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.	Aminotransferase class V.	0.790
Jann_2365	Jann_2355	Aminotransferase class V.	Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.	0.790
Jann_2602	Jann_1162	Serine-glyoxylate aminotransferase apoenzyme.	Aminotransferase class V.	0.908
Jann_2602	Jann_3472	Serine-glyoxylate aminotransferase apoenzyme.	Aminotransferase class V.	0.920
Jann_3472	Jann_1162	Aminotransferase class V.	Aminotransferase class V.	0.915
Jann_3472	Jann_2602	Aminotransferase class V.	Serine-glyoxylate aminotransferase apoenzyme.	0.920