11 items (Ursus maritimus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LMO3	LIM domain only protein 3. (156 aa)
	LDB2	LIM domain-binding protein 2 isoform X1. (373 aa)
	SSBP2	Single-stranded DNA-binding protein 2 isoform X4. (390 aa)
	TCF4	Transcription factor 4 isoform X5. (511 aa)
	ENSUMAP00000004364	annotation not available (196 aa)
	LYL1	LYL1 basic helix-loop-helix family member. (390 aa)
	LMO1	LIM domain only 1. (145 aa)
	TAL2	Fukutin isoform X7. (105 aa)
	LMO2	Rhombotin-2 isoform X2. (155 aa)
	LDB1	LIM domain-binding protein 1 isoform X1. (375 aa)
	LHX9	LIM/homeobox protein Lhx9. (397 aa)

Your Current Organism:

Ursus maritimus

NCBI taxonomy Id: 29073
Other names: Thalarctos maritimus, U. maritimus, polar bear, white bear

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSUMAP00000004364	LDB1	ENSUMAP00000004364	ENSUMAP00000031949	annotation not available	LIM domain-binding protein 1 isoform X1.	0.603
ENSUMAP00000004364	LDB2	ENSUMAP00000004364	ENSUMAP00000004072	annotation not available	LIM domain-binding protein 2 isoform X1.	0.532
ENSUMAP00000004364	LMO1	ENSUMAP00000004364	ENSUMAP00000019087	annotation not available	LIM domain only 1.	0.456
ENSUMAP00000004364	LMO2	ENSUMAP00000004364	ENSUMAP00000025852	annotation not available	Rhombotin-2 isoform X2.	0.677
ENSUMAP00000004364	LMO3	ENSUMAP00000004364	ENSUMAP00000003424	annotation not available	LIM domain only protein 3.	0.456
ENSUMAP00000004364	LYL1	ENSUMAP00000004364	ENSUMAP00000007836	annotation not available	LYL1 basic helix-loop-helix family member.	0.547
ENSUMAP00000004364	TAL2	ENSUMAP00000004364	ENSUMAP00000019169	annotation not available	Fukutin isoform X7.	0.518
ENSUMAP00000004364	TCF4	ENSUMAP00000004364	ENSUMAP00000004342	annotation not available	Transcription factor 4 isoform X5.	0.896
LDB1	ENSUMAP00000004364	ENSUMAP00000031949	ENSUMAP00000004364	LIM domain-binding protein 1 isoform X1.	annotation not available	0.603
LDB1	LHX9	ENSUMAP00000031949	ENSUMAP00000035287	LIM domain-binding protein 1 isoform X1.	LIM/homeobox protein Lhx9.	0.712
LDB1	LMO1	ENSUMAP00000031949	ENSUMAP00000019087	LIM domain-binding protein 1 isoform X1.	LIM domain only 1.	0.786
LDB1	LMO2	ENSUMAP00000031949	ENSUMAP00000025852	LIM domain-binding protein 1 isoform X1.	Rhombotin-2 isoform X2.	0.987
LDB1	LMO3	ENSUMAP00000031949	ENSUMAP00000003424	LIM domain-binding protein 1 isoform X1.	LIM domain only protein 3.	0.786
LDB1	LYL1	ENSUMAP00000031949	ENSUMAP00000007836	LIM domain-binding protein 1 isoform X1.	LYL1 basic helix-loop-helix family member.	0.672
LDB1	SSBP2	ENSUMAP00000031949	ENSUMAP00000004080	LIM domain-binding protein 1 isoform X1.	Single-stranded DNA-binding protein 2 isoform X4.	0.682
LDB1	TAL2	ENSUMAP00000031949	ENSUMAP00000019169	LIM domain-binding protein 1 isoform X1.	Fukutin isoform X7.	0.534
LDB1	TCF4	ENSUMAP00000031949	ENSUMAP00000004342	LIM domain-binding protein 1 isoform X1.	Transcription factor 4 isoform X5.	0.735
LDB2	ENSUMAP00000004364	ENSUMAP00000004072	ENSUMAP00000004364	LIM domain-binding protein 2 isoform X1.	annotation not available	0.532
LDB2	LHX9	ENSUMAP00000004072	ENSUMAP00000035287	LIM domain-binding protein 2 isoform X1.	LIM/homeobox protein Lhx9.	0.750
LDB2	LMO1	ENSUMAP00000004072	ENSUMAP00000019087	LIM domain-binding protein 2 isoform X1.	LIM domain only 1.	0.780