STRINGSTRING
ENSUMAP00000000055 ENSUMAP00000000055 SNRPD3 SNRPD3 SNRPB SNRPB SNRPF SNRPF SF3B4 SF3B4 SF3B5 SF3B5 SNRPE SNRPE LOC103671444 LOC103671444 SF3A2 SF3A2 SNRPC SNRPC SF3B2 SF3B2 SF3A1 SF3A1 DDX42 DDX42 DDX46 DDX46 SF3B3 SF3B3 SNRPD1 SNRPD1 SF3B1 SF3B1 PHF5A PHF5A SF3A3 SF3A3 SNRPG SNRPG SF3B6 SF3B6 SNRPD2 SNRPD2 SNRPA1 SNRPA1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ENSUMAP00000000055annotation not available (132 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (185 aa)
SNRPBSmall nuclear ribonucleoprotein polypeptides B and B1. (217 aa)
SNRPFSmall nuclear ribonucleoprotein polypeptide F. (86 aa)
SF3B4Splicing factor 3B subunit 4. (422 aa)
SF3B5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
SNRPESmall nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (134 aa)
LOC103671444Small nuclear ribonucleoprotein F-like. (85 aa)
SF3A2Splicing factor 3A subunit 2. (434 aa)
SNRPCSmall nuclear ribonucleoprotein polypeptide C. (178 aa)
SF3B2Splicing factor 3B subunit 2 isoform X2. (895 aa)
SF3A1Splicing factor 3A subunit 1. (791 aa)
DDX42ATP-dependent RNA helicase DDX42. (931 aa)
DDX46LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX46. (1010 aa)
SF3B3Splicing factor 3B subunit 3. (1217 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (119 aa)
SF3B1Splicing factor 3B subunit 1 isoform X1. (1304 aa)
PHF5APHD finger-like domain-containing protein 5A. (107 aa)
SF3A3Splicing factor 3A subunit 3. (501 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (85 aa)
SF3B6Splicing factor 3B subunit 6. (125 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (118 aa)
SNRPA1Small nuclear ribonucleoprotein polypeptide A. (255 aa)
Your Current Organism:
Ursus maritimus
NCBI taxonomy Id: 29073
Other names: Thalarctos maritimus, U. maritimus, polar bear, white bear
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