45 items (Neomonachus schauinslandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	WRAP53	Telomerase Cajal body protein 1 isoform X1. (532 aa)
	ZC3H8	Zinc finger CCCH domain-containing protein 8. (305 aa)
	SRRM2	Serine/arginine repetitive matrix protein 2 isoform X1. (2749 aa)
	LOC110587901	rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1. (330 aa)
	HINFP	Histone H4 transcription factor isoform X1. (518 aa)
	NOLC1	Nucleolar and coiled-body phosphoprotein 1 isoform X1. (701 aa)
	LOC110589199	Adenylate kinase isoenzyme 6; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. May have a role in nuclear energy homeostasis. Has also ATPase activity. May be involved in regulation of Cajal body (CB) formation; Belongs to the adenylate kinase family. AK6 subfamily. (165 aa)
	SMNDC1	Survival of motor neuron-related-splicing factor 30 isoform X1. (238 aa)
	FBL	rRNA 2'-O-methyltransferase fibrillarin. (313 aa)
	PHAX	Phosphorylated adapter RNA export protein. (394 aa)
	AK6	Adenylate kinase isoenzyme 6; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. May have a role in nuclear energy homeostasis. Has also ATPase activity. May be involved in regulation of Cajal body (CB) formation; Belongs to the adenylate kinase family. AK6 subfamily. (172 aa)
	LOC110591193	Survival motor neuron protein. (288 aa)
	NOP58	Nucleolar protein 58 isoform X1. (539 aa)
	SART3	Squamous cell carcinoma antigen recognized by T-cells 3. (964 aa)
	NHP2	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (153 aa)
	GEMIN4	Gem-associated protein 4. (1057 aa)
	ICE1	Little elongation complex subunit 1 isoform X2. (2270 aa)
	COIL	Coilin. (576 aa)
	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component. (972 aa)
	ZNF473	Zinc finger protein 473. (890 aa)
	ISG20	Interferon-stimulated gene 20 kDa protein. (171 aa)
	LOC110571909	Adenylate kinase isoenzyme 6; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. May have a role in nuclear energy homeostasis. Has also ATPase activity. May be involved in regulation of Cajal body (CB) formation; Belongs to the adenylate kinase family. AK6 subfamily. (172 aa)
	LOC110570423	Protein Mis18-beta-like isoform X1. (171 aa)
	USPL1	SUMO-specific isopeptidase USPL1. (909 aa)
	HABP4	Intracellular hyaluronan-binding protein 4 isoform X1. (404 aa)
	PRPF31	U4/U6 small nuclear ribonucleoprotein Prp31. (499 aa)
	USH1G	Usher syndrome type-1G protein. (461 aa)
	ANGEL2	Protein angel homolog 2 isoform X2. (544 aa)
	DKC1	H/ACA ribonucleoprotein complex subunit 4. (517 aa)
	TOE1	Target of EGR1 protein 1. (510 aa)
	ELL	RNA polymerase II elongation factor ELL. (597 aa)
	SNRPC	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (159 aa)
	SART1	U4/U6.U5 tri-snRNP-associated protein 1 isoform X1. (806 aa)
	LSM10	U7 snRNA-associated Sm-like protein LSm10 isoform X1. (175 aa)
	CDK2	Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily. (298 aa)
	LOC110577916	Adenylate kinase isoenzyme 6; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. May have a role in nuclear energy homeostasis. Has also ATPase activity. May be involved in regulation of Cajal body (CB) formation; Belongs to the adenylate kinase family. AK6 subfamily. (172 aa)
	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3. (683 aa)
	LSG1	Large subunit GTPase 1 homolog. (658 aa)
	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4. (521 aa)
	OIP5	Protein Mis18-beta. (229 aa)
	ICE2	Little elongation complex subunit 2. (979 aa)
	ARIH1	RBR-type E3 ubiquitin transferase. (556 aa)
	ZPR1	Zinc finger protein ZPR1. (460 aa)
	LOC110586156	Protein NPAT. (1447 aa)
	FAM118B	Protein FAM118B isoform X1. (350 aa)

Your Current Organism:

Neomonachus schauinslandi

NCBI taxonomy Id: 29088
Other names: Hawaiian monk seal, Monachus schauinslandi, N. schauinslandi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AK6	NHP2	A0A2Y9I1P0	A0A2Y9I5V4	Adenylate kinase isoenzyme 6; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. May have a role in nuclear energy homeostasis. Has also ATPase activity. May be involved in regulation of Cajal body (CB) formation; Belongs to the adenylate kinase family. AK6 subfamily.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.442
ARIH1	CDK2	A0A2Y9HJQ2	A0A2Y9GUJ7	RBR-type E3 ubiquitin transferase.	Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily.	0.568
CDK2	ARIH1	A0A2Y9GUJ7	A0A2Y9HJQ2	Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily.	RBR-type E3 ubiquitin transferase.	0.568
CDK2	LOC110586156	A0A2Y9GUJ7	A0A2Y9HK20	Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily.	Protein NPAT.	0.583
COIL	FBL	A0A2Y9IBL8	A0A2Y9HYN0	Coilin.	rRNA 2'-O-methyltransferase fibrillarin.	0.408
COIL	LOC110587901	A0A2Y9IBL8	A0A2Y9HQC9	Coilin.	rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1.	0.408
DKC1	FBL	A0A2Y9GH93	A0A2Y9HYN0	H/ACA ribonucleoprotein complex subunit 4.	rRNA 2'-O-methyltransferase fibrillarin.	0.978
DKC1	LOC110587901	A0A2Y9GH93	A0A2Y9HQC9	H/ACA ribonucleoprotein complex subunit 4.	rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1.	0.978
DKC1	LSG1	A0A2Y9GH93	A0A2Y9H8S6	H/ACA ribonucleoprotein complex subunit 4.	Large subunit GTPase 1 homolog.	0.701
DKC1	NHP2	A0A2Y9GH93	A0A2Y9I5V4	H/ACA ribonucleoprotein complex subunit 4.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.999
DKC1	NOLC1	A0A2Y9GH93	A0A2Y9HTY4	H/ACA ribonucleoprotein complex subunit 4.	Nucleolar and coiled-body phosphoprotein 1 isoform X1.	0.953
DKC1	NOP58	A0A2Y9GH93	A0A2Y9I518	H/ACA ribonucleoprotein complex subunit 4.	Nucleolar protein 58 isoform X1.	0.995
DKC1	WRAP53	A0A2Y9GH93	A0A2Y9HL74	H/ACA ribonucleoprotein complex subunit 4.	Telomerase Cajal body protein 1 isoform X1.	0.994
EFTUD2	HABP4	A0A2Y9GEI3	A0A2Y9G3H5	116 kDa U5 small nuclear ribonucleoprotein component.	Intracellular hyaluronan-binding protein 4 isoform X1.	0.604
EFTUD2	LSM10	A0A2Y9GEI3	A0A2Y9GPW3	116 kDa U5 small nuclear ribonucleoprotein component.	U7 snRNA-associated Sm-like protein LSm10 isoform X1.	0.952
EFTUD2	NHP2	A0A2Y9GEI3	A0A2Y9I5V4	116 kDa U5 small nuclear ribonucleoprotein component.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.658
EFTUD2	NOLC1	A0A2Y9GEI3	A0A2Y9HTY4	116 kDa U5 small nuclear ribonucleoprotein component.	Nucleolar and coiled-body phosphoprotein 1 isoform X1.	0.478
EFTUD2	NOP58	A0A2Y9GEI3	A0A2Y9I518	116 kDa U5 small nuclear ribonucleoprotein component.	Nucleolar protein 58 isoform X1.	0.433
EFTUD2	PRPF3	A0A2Y9GEI3	A0A2Y9H115	116 kDa U5 small nuclear ribonucleoprotein component.	U4/U6 small nuclear ribonucleoprotein Prp3.	0.980
EFTUD2	PRPF31	A0A2Y9GEI3	A0A2Y9GG11	116 kDa U5 small nuclear ribonucleoprotein component.	U4/U6 small nuclear ribonucleoprotein Prp31.	0.982