STRINGSTRING
SART3 SART3 PRPF8 PRPF8 CCNT1 CCNT1 SF3B3 SF3B3 DDX39A DDX39A LARP7 LARP7 TOE1 TOE1 HEXIM1 HEXIM1 LSM4 LSM4 PRPF31 PRPF31 EFTUD2 EFTUD2 HEXIM2 HEXIM2 SNRNP70 SNRNP70 MEPCE MEPCE ISG20 ISG20 SNRPA1 SNRPA1 RBM41 RBM41 TUT1 TUT1 SNRPC SNRPC RNPC3 RNPC3 HNRNPU HNRNPU SNU13 SNU13 LSM10 LSM10 PRPF4 PRPF4 CDK9 CDK9 GEMIN5 GEMIN5 CCNT2 CCNT2 RBM22 RBM22 LOC110587167 LOC110587167 SNRNP35 SNRNP35 DDX39B DDX39B DDX21 DDX21 LSM11 LSM11 LRMDA LRMDA SNRPB2 SNRPB2 SNRPA SNRPA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SART3Squamous cell carcinoma antigen recognized by T-cells 3. (964 aa)
PRPF8pre-mRNA-processing-splicing factor 8. (2335 aa)
CCNT1cyclin-T1; Belongs to the cyclin family. (726 aa)
SF3B3Splicing factor 3B subunit 3 isoform X1. (1217 aa)
DDX39AATP-dependent RNA helicase DDX39A. (427 aa)
LARP7La-related protein 7 isoform X1. (575 aa)
TOE1Target of EGR1 protein 1. (510 aa)
HEXIM1Protein HEXIM1. (359 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (139 aa)
PRPF31U4/U6 small nuclear ribonucleoprotein Prp31. (499 aa)
EFTUD2116 kDa U5 small nuclear ribonucleoprotein component. (972 aa)
HEXIM2Protein HEXIM2. (310 aa)
SNRNP70LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein 70 kDa. (429 aa)
MEPCE7SK snRNA methylphosphate capping enzyme. (697 aa)
ISG20Interferon-stimulated gene 20 kDa protein. (171 aa)
SNRPA1U2 small nuclear ribonucleoprotein A' isoform X1. (255 aa)
RBM41RNA-binding protein 41. (437 aa)
TUT1Speckle targeted PIP5K1A-regulated poly(A) polymerase isoform X1. (871 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (159 aa)
RNPC3RNA-binding protein 40. (518 aa)
HNRNPUHeterogeneous nuclear ribonucleoprotein U isoform X1. (825 aa)
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
LSM10U7 snRNA-associated Sm-like protein LSm10 isoform X1. (175 aa)
PRPF4U4/U6 small nuclear ribonucleoprotein Prp4. (521 aa)
CDK9Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily. (372 aa)
GEMIN5Gem-associated protein 5. (1508 aa)
CCNT2cyclin-T2 isoform X1; Belongs to the cyclin family. (733 aa)
RBM22pre-mRNA-splicing factor RBM22 isoform X1. (420 aa)
LOC110587167U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
SNRNP35U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1. (254 aa)
DDX39BSpliceosome RNA helicase DDX39B isoform X1. (435 aa)
DDX21Nucleolar RNA helicase 2. (795 aa)
LSM11U7 snRNA-associated Sm-like protein LSm11. (359 aa)
LRMDALeucine-rich repeat-containing protein C10orf11 homolog. (258 aa)
SNRPB2U2 small nuclear ribonucleoprotein B'' isoform X1. (247 aa)
SNRPAU1 small nuclear ribonucleoprotein A isoform X1. (282 aa)
Your Current Organism:
Neomonachus schauinslandi
NCBI taxonomy Id: 29088
Other names: Hawaiian monk seal, Monachus schauinslandi, N. schauinslandi
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