STRINGSTRING
SNRPN SNRPN LSM2 LSM2 LOC110587167 LOC110587167 LOC110587414 LOC110587414 SNRNP200 SNRNP200 USP39 USP39 SNRNP27 SNRNP27 LOC110588889 LOC110588889 LOC110589897 LOC110589897 RBM42 RBM42 CUNH19orf54 CUNH19orf54 LSM8 LSM8 ZMAT2 ZMAT2 SNRPA SNRPA PRPF8 PRPF8 LSM7 LSM7 TXNL4B TXNL4B DDX23 DDX23 SNRPB SNRPB SNRPE SNRPE TXNL4A TXNL4A SART1 SART1 SNRNP40 SNRNP40 LSM4 LSM4 PRPF31 PRPF31 EFTUD2 EFTUD2 SNRPD2 SNRPD2 LSM6 LSM6 PRPF6 PRPF6 SNU13 SNU13 PRPF3 PRPF3 LSM5 LSM5 PRPF4 PRPF4 PRPF18 PRPF18
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SNRPNSmall nuclear ribonucleoprotein-associated protein. (240 aa)
LSM2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
LOC110587167U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
LOC110587414Small nuclear ribonucleoprotein F-like. (86 aa)
SNRNP200U5 small nuclear ribonucleoprotein 200 kDa helicase. (2136 aa)
USP39U4/U6.U5 tri-snRNP-associated protein 2. (565 aa)
SNRNP27U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein. (155 aa)
LOC110588889Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (92 aa)
LOC110589897Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (92 aa)
RBM42RNA-binding protein 42 isoform X1. (477 aa)
CUNH19orf54UPF0692 protein C19orf54 homolog. (342 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
ZMAT2Zinc finger matrin-type protein 2 isoform X1. (203 aa)
SNRPAU1 small nuclear ribonucleoprotein A isoform X1. (282 aa)
PRPF8pre-mRNA-processing-splicing factor 8. (2335 aa)
LSM7U6 snRNA-associated Sm-like protein LSm7. (103 aa)
TXNL4BThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
DDX23Probable ATP-dependent RNA helicase DDX23. (820 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
SNRPESmall nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (134 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
SART1U4/U6.U5 tri-snRNP-associated protein 1 isoform X1. (806 aa)
SNRNP40U5 small nuclear ribonucleoprotein 40 kDa protein. (358 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (139 aa)
PRPF31U4/U6 small nuclear ribonucleoprotein Prp31. (499 aa)
EFTUD2116 kDa U5 small nuclear ribonucleoprotein component. (972 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (118 aa)
LSM6U6 snRNA-associated Sm-like protein LSm6 isoform X1. (88 aa)
PRPF6pre-mRNA-processing factor 6. (1102 aa)
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
PRPF3U4/U6 small nuclear ribonucleoprotein Prp3. (683 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
PRPF4U4/U6 small nuclear ribonucleoprotein Prp4. (521 aa)
PRPF18pre-mRNA-splicing factor 18 isoform X3. (342 aa)
Your Current Organism:
Neomonachus schauinslandi
NCBI taxonomy Id: 29088
Other names: Hawaiian monk seal, Monachus schauinslandi, N. schauinslandi
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