(46 nodes) Potassium channel complex network (Neomonachus schauinslandi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KCNMA1	Calcium-activated potassium channel subunit alpha-1 isoform X2. (1262 aa)
	KCNA6	Potassium voltage-gated channel subfamily A member 6; Belongs to the potassium channel family. (528 aa)
	KCNIP3	Calsenilin. (230 aa)
	ABCC9	ATP-binding cassette sub-family C member 9 isoform X2. (1549 aa)
	KCNA5	Potassium voltage-gated channel subfamily A member 5; Belongs to the potassium channel family. (603 aa)
	KCNJ8	ATP-sensitive inward rectifier potassium channel 8. (424 aa)
	KCNA1	Potassium voltage-gated channel subfamily A member 1; Belongs to the potassium channel family. (495 aa)
	KCNQ5	Potassium voltage-gated channel subfamily KQT member 5 isoform X1. (952 aa)
	KCNS3	Potassium voltage-gated channel subfamily S member 3; Belongs to the potassium channel family. (491 aa)
	KCNK4	Potassium channel subfamily K member 4; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (397 aa)
	KCNQ4	Potassium voltage-gated channel subfamily KQT member 4; Belongs to the potassium channel family. (651 aa)
	HCN3	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3. (782 aa)
	LRRC38	Leucine-rich repeat-containing protein 38. (300 aa)
	LRRC52	Leucine-rich repeat-containing protein 52. (315 aa)
	KCNMB3	LOW QUALITY PROTEIN: calcium-activated potassium channel subunit beta-3. (185 aa)
	KCNH1	Potassium voltage-gated channel subfamily H member 1 isoform X1. (987 aa)
	KCNIP4	Kv channel-interacting protein 4 isoform X1. (257 aa)
	KCNE5	Potassium voltage-gated channel subfamily E regulatory beta subunit 5. (137 aa)
	KCNMB4	Calcium-activated potassium channel subunit beta-4. (210 aa)
	KCNH6	Potassium voltage-gated channel subfamily H member 6 isoform X1. (998 aa)
	GRIK5	Glutamate receptor ionotropic, kainate 5 isoform X1. (981 aa)
	KCNIP1	Kv channel-interacting protein 1 isoform X1. (236 aa)
	KCNV2	Potassium voltage-gated channel subfamily V member 2; Belongs to the potassium channel family. (552 aa)
	KCNA4	Potassium voltage-gated channel subfamily A member 4; Belongs to the potassium channel family. (655 aa)
	DPP10	Inactive dipeptidyl peptidase 10 isoform X2; Belongs to the peptidase S9B family. (800 aa)
	HCN1	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1. (875 aa)
	HCN4	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4. (1201 aa)
	KCNG4	Potassium voltage-gated channel subfamily G member 4; Belongs to the potassium channel family. (507 aa)
	KCNIP2	Kv channel-interacting protein 2 isoform X1. (285 aa)
	GRIK1	LOW QUALITY PROTEIN: glutamate receptor ionotropic, kainate 1. (920 aa)
	KCNJ5	G protein-activated inward rectifier potassium channel 4. (419 aa)
	GRIK4	Glutamate receptor ionotropic, kainate 4. (956 aa)
	GRIK2	Glutamate receptor ionotropic, kainate 2 isoform X1. (908 aa)
	ABCB8	ATP-binding cassette sub-family B member 8, mitochondrial isoform X1. (713 aa)
	LRRC55	LOW QUALITY PROTEIN: leucine-rich repeat-containing protein 55. (340 aa)
	KCNG3	Potassium voltage-gated channel subfamily G member 3 isoform X1; Belongs to the potassium channel family. (436 aa)
	LRRC26	Leucine-rich repeat-containing protein 26. (351 aa)
	KCNH5	Potassium voltage-gated channel subfamily H member 5. (988 aa)
	KCNJ11	ATP-sensitive inward rectifier potassium channel 11. (390 aa)
	GRIK3	Glutamate receptor ionotropic, kainate 3 isoform X1. (919 aa)
	CCDC51	Coiled-coil domain-containing protein 51 isoform X1. (410 aa)
	ABCC8	ATP-binding cassette sub-family C member 8 isoform X1. (1602 aa)
	KCNMB2	Calcium-activated potassium channel subunit beta-2. (235 aa)
	KCNK6	Potassium channel subfamily K member. (313 aa)
	DPP6	Dipeptidyl aminopeptidase-like protein 6; Belongs to the peptidase S9B family. (864 aa)
	KCNH2	Potassium voltage-gated channel subfamily H member 2. (819 aa)

Your Current Organism:

Neomonachus schauinslandi

NCBI taxonomy Id: 29088
Other names: Hawaiian monk seal, Monachus schauinslandi, N. schauinslandi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCB8	CCDC51	A0A2Y9HGF7	A0A2Y9GU17	ATP-binding cassette sub-family B member 8, mitochondrial isoform X1.	Coiled-coil domain-containing protein 51 isoform X1.	0.456
ABCC8	KCNJ11	A0A2Y9GQJ1	A0A2Y9GUG0	ATP-binding cassette sub-family C member 8 isoform X1.	ATP-sensitive inward rectifier potassium channel 11.	0.999
ABCC8	KCNJ5	A0A2Y9GQJ1	A0A2Y9HKI4	ATP-binding cassette sub-family C member 8 isoform X1.	G protein-activated inward rectifier potassium channel 4.	0.408
ABCC8	KCNJ8	A0A2Y9GQJ1	A0A2Y9H3W2	ATP-binding cassette sub-family C member 8 isoform X1.	ATP-sensitive inward rectifier potassium channel 8.	0.967
ABCC9	KCNA5	A0A2Y9H489	A0A2Y9H3U3	ATP-binding cassette sub-family C member 9 isoform X2.	Potassium voltage-gated channel subfamily A member 5; Belongs to the potassium channel family.	0.456
ABCC9	KCNE5	A0A2Y9H489	A0A2Y9G788	ATP-binding cassette sub-family C member 9 isoform X2.	Potassium voltage-gated channel subfamily E regulatory beta subunit 5.	0.481
ABCC9	KCNH2	A0A2Y9H489	A0A2Y9H9X1	ATP-binding cassette sub-family C member 9 isoform X2.	Potassium voltage-gated channel subfamily H member 2.	0.531
ABCC9	KCNJ11	A0A2Y9H489	A0A2Y9GUG0	ATP-binding cassette sub-family C member 9 isoform X2.	ATP-sensitive inward rectifier potassium channel 11.	0.996
ABCC9	KCNJ5	A0A2Y9H489	A0A2Y9HKI4	ATP-binding cassette sub-family C member 9 isoform X2.	G protein-activated inward rectifier potassium channel 4.	0.510
ABCC9	KCNJ8	A0A2Y9H489	A0A2Y9H3W2	ATP-binding cassette sub-family C member 9 isoform X2.	ATP-sensitive inward rectifier potassium channel 8.	0.992
CCDC51	ABCB8	A0A2Y9GU17	A0A2Y9HGF7	Coiled-coil domain-containing protein 51 isoform X1.	ATP-binding cassette sub-family B member 8, mitochondrial isoform X1.	0.456
DPP10	DPP6	A0A2Y9HIC7	A0A2Y9H9V8	Inactive dipeptidyl peptidase 10 isoform X2; Belongs to the peptidase S9B family.	Dipeptidyl aminopeptidase-like protein 6; Belongs to the peptidase S9B family.	0.539
DPP10	KCNIP1	A0A2Y9HIC7	A0A2Y9HQ55	Inactive dipeptidyl peptidase 10 isoform X2; Belongs to the peptidase S9B family.	Kv channel-interacting protein 1 isoform X1.	0.422
DPP10	KCNIP2	A0A2Y9HIC7	A0A2Y9HZ55	Inactive dipeptidyl peptidase 10 isoform X2; Belongs to the peptidase S9B family.	Kv channel-interacting protein 2 isoform X1.	0.408
DPP10	KCNIP3	A0A2Y9HIC7	A0A2Y9HN39	Inactive dipeptidyl peptidase 10 isoform X2; Belongs to the peptidase S9B family.	Calsenilin.	0.583
DPP10	KCNIP4	A0A2Y9HIC7	A0A2Y9G7Q2	Inactive dipeptidyl peptidase 10 isoform X2; Belongs to the peptidase S9B family.	Kv channel-interacting protein 4 isoform X1.	0.408
DPP6	DPP10	A0A2Y9H9V8	A0A2Y9HIC7	Dipeptidyl aminopeptidase-like protein 6; Belongs to the peptidase S9B family.	Inactive dipeptidyl peptidase 10 isoform X2; Belongs to the peptidase S9B family.	0.539
DPP6	KCNIP1	A0A2Y9H9V8	A0A2Y9HQ55	Dipeptidyl aminopeptidase-like protein 6; Belongs to the peptidase S9B family.	Kv channel-interacting protein 1 isoform X1.	0.834
DPP6	KCNIP2	A0A2Y9H9V8	A0A2Y9HZ55	Dipeptidyl aminopeptidase-like protein 6; Belongs to the peptidase S9B family.	Kv channel-interacting protein 2 isoform X1.	0.496
DPP6	KCNIP3	A0A2Y9H9V8	A0A2Y9HN39	Dipeptidyl aminopeptidase-like protein 6; Belongs to the peptidase S9B family.	Calsenilin.	0.576