(18 nodes) Mixed, incl. Muscle alpha-actinin binding, and Vinculin family network (Vombatus ursinus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PDLIM1	PDZ and LIM domain 1. (314 aa)
	PDLIM5	Uncharacterized protein. (595 aa)
	TLNRD1	Uncharacterized protein. (369 aa)
	PDLIM4	Uncharacterized protein. (328 aa)
	SORBS2	Uncharacterized protein. (1204 aa)
	LMO7	Uncharacterized protein. (1346 aa)
	ENSVURP00010015863	Uncharacterized protein. (354 aa)
	VCL	Uncharacterized protein. (1133 aa)
	TLN1	Uncharacterized protein. (2543 aa)
	ENSVURP00010019227	Uncharacterized protein. (101 aa)
	PDLIM2	Uncharacterized protein. (360 aa)
	CTNNA3	Uncharacterized protein. (592 aa)
	ENSVURP00010022038	annotation not available (764 aa)
	ENSVURP00010029697	Uncharacterized protein. (497 aa)
	ENSVURP00010029705	annotation not available (497 aa)
	ACTN4	Uncharacterized protein. (909 aa)
	ACTN1	Uncharacterized protein. (914 aa)
	APBB1IP	Uncharacterized protein. (659 aa)

Your Current Organism:

Vombatus ursinus

NCBI taxonomy Id: 29139
Other names: V. ursinus, coarse-haired wombat, common wombat

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTN1	ACTN4	ENSVURP00010030543	ENSVURP00010030445	Uncharacterized protein.	Uncharacterized protein.	0.886
ACTN1	CTNNA3	ENSVURP00010030543	ENSVURP00010020389	Uncharacterized protein.	Uncharacterized protein.	0.928
ACTN1	ENSVURP00010015863	ENSVURP00010030543	ENSVURP00010015863	Uncharacterized protein.	Uncharacterized protein.	0.928
ACTN1	ENSVURP00010019227	ENSVURP00010030543	ENSVURP00010019227	Uncharacterized protein.	Uncharacterized protein.	0.919
ACTN1	ENSVURP00010022038	ENSVURP00010030543	ENSVURP00010022038	Uncharacterized protein.	annotation not available	0.584
ACTN1	ENSVURP00010029697	ENSVURP00010030543	ENSVURP00010029697	Uncharacterized protein.	Uncharacterized protein.	0.811
ACTN1	ENSVURP00010029705	ENSVURP00010030543	ENSVURP00010029705	Uncharacterized protein.	annotation not available	0.811
ACTN1	LMO7	ENSVURP00010030543	ENSVURP00010012077	Uncharacterized protein.	Uncharacterized protein.	0.905
ACTN1	PDLIM1	ENSVURP00010030543	ENSVURP00010001698	Uncharacterized protein.	PDZ and LIM domain 1.	0.873
ACTN1	PDLIM2	ENSVURP00010030543	ENSVURP00010019509	Uncharacterized protein.	Uncharacterized protein.	0.498
ACTN1	PDLIM5	ENSVURP00010030543	ENSVURP00010002914	Uncharacterized protein.	Uncharacterized protein.	0.811
ACTN1	TLN1	ENSVURP00010030543	ENSVURP00010019136	Uncharacterized protein.	Uncharacterized protein.	0.438
ACTN1	TLNRD1	ENSVURP00010030543	ENSVURP00010006281	Uncharacterized protein.	Uncharacterized protein.	0.438
ACTN1	VCL	ENSVURP00010030543	ENSVURP00010017887	Uncharacterized protein.	Uncharacterized protein.	0.993
ACTN4	ACTN1	ENSVURP00010030445	ENSVURP00010030543	Uncharacterized protein.	Uncharacterized protein.	0.886
ACTN4	CTNNA3	ENSVURP00010030445	ENSVURP00010020389	Uncharacterized protein.	Uncharacterized protein.	0.928
ACTN4	ENSVURP00010015863	ENSVURP00010030445	ENSVURP00010015863	Uncharacterized protein.	Uncharacterized protein.	0.928
ACTN4	ENSVURP00010019227	ENSVURP00010030445	ENSVURP00010019227	Uncharacterized protein.	Uncharacterized protein.	0.919
ACTN4	ENSVURP00010022038	ENSVURP00010030445	ENSVURP00010022038	Uncharacterized protein.	annotation not available	0.584
ACTN4	ENSVURP00010029697	ENSVURP00010030445	ENSVURP00010029697	Uncharacterized protein.	Uncharacterized protein.	0.811