(42 nodes) Axonemal microtubule, and Tubulin network (Vombatus ursinus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CFAP53	Uncharacterized protein. (508 aa)
	MBD1	Uncharacterized protein. (293 aa)
	LOC114031921	Uncharacterized protein. (239 aa)
	CFAP45	Uncharacterized protein. (553 aa)
	EFHC2	Uncharacterized protein. (747 aa)
	CFAP52	Uncharacterized protein. (621 aa)
	TUBB2A	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (445 aa)
	ENSVURP00010006577	annotation not available (239 aa)
	CUNH15orf65	Uncharacterized protein. (135 aa)
	MNS1	Uncharacterized protein. (496 aa)
	ENSVURP00010008488	Tubulin domain-containing protein. (127 aa)
	C9orf116	Uncharacterized protein. (136 aa)
	C9orf135	Uncharacterized protein. (222 aa)
	ENSVURP00010010115	Uncharacterized protein. (1274 aa)
	ENSVURP00010014386	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (376 aa)
	ENSVURP00010014915	Uncharacterized protein. (202 aa)
	CCDC151	Uncharacterized protein. (579 aa)
	EFHC1	EF-hand domain containing 1. (677 aa)
	FAM166B	Uncharacterized protein. (281 aa)
	TEKT4	Uncharacterized protein. (447 aa)
	WDR90	Uncharacterized protein. (1857 aa)
	C1orf194	Uncharacterized protein. (170 aa)
	ENSVURP00010021191	Uncharacterized protein. (235 aa)
	ENSVURP00010023907	Uncharacterized protein. (90 aa)
	TUBB1	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (450 aa)
	ENSVURP00010025100	annotation not available (112 aa)
	CFAP126	Uncharacterized protein. (241 aa)
	CCDC173	Coiled-coil domain containing 173. (547 aa)
	TUBB3	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (450 aa)
	LOC114032238	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (449 aa)
	RIBC1	Uncharacterized protein. (400 aa)
	ENSVURP00010028552	annotation not available (449 aa)
	ENSVURP00010028701	Uncharacterized protein. (380 aa)
	EFHB	Uncharacterized protein. (824 aa)
	LOC114050037	Uncharacterized protein. (108 aa)
	ARMC3	Uncharacterized protein. (860 aa)
	RIBC2	RIB43A domain with coiled-coils 2. (397 aa)
	TUBB4A	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (445 aa)
	ARMC4	Uncharacterized protein. (1046 aa)
	ENKUR	Enkurin domain-containing protein. (256 aa)
	TEKT1	Uncharacterized protein. (402 aa)
	C19orf71	Chromosome 19 open reading frame 71. (202 aa)

Your Current Organism:

Vombatus ursinus

NCBI taxonomy Id: 29139
Other names: V. ursinus, coarse-haired wombat, common wombat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARMC3	ARMC4	ENSVURP00010030434	ENSVURP00010031901	Uncharacterized protein.	Uncharacterized protein.	0.409
ARMC3	C19orf71	ENSVURP00010030434	ENSVURP00010032460	Uncharacterized protein.	Chromosome 19 open reading frame 71.	0.848
ARMC3	C1orf194	ENSVURP00010030434	ENSVURP00010020329	Uncharacterized protein.	Uncharacterized protein.	0.892
ARMC3	C9orf116	ENSVURP00010030434	ENSVURP00010009099	Uncharacterized protein.	Uncharacterized protein.	0.926
ARMC3	C9orf135	ENSVURP00010030434	ENSVURP00010009336	Uncharacterized protein.	Uncharacterized protein.	0.847
ARMC3	CCDC151	ENSVURP00010030434	ENSVURP00010015971	Uncharacterized protein.	Uncharacterized protein.	0.636
ARMC3	CFAP126	ENSVURP00010030434	ENSVURP00010025134	Uncharacterized protein.	Uncharacterized protein.	0.907
ARMC3	CFAP45	ENSVURP00010030434	ENSVURP00010002887	Uncharacterized protein.	Uncharacterized protein.	0.862
ARMC3	CFAP52	ENSVURP00010030434	ENSVURP00010005693	Uncharacterized protein.	Uncharacterized protein.	0.727
ARMC3	CUNH15orf65	ENSVURP00010030434	ENSVURP00010006811	Uncharacterized protein.	Uncharacterized protein.	0.836
ARMC3	EFHB	ENSVURP00010030434	ENSVURP00010029030	Uncharacterized protein.	Uncharacterized protein.	0.851
ARMC3	EFHC1	ENSVURP00010030434	ENSVURP00010017315	Uncharacterized protein.	EF-hand domain containing 1.	0.792
ARMC3	EFHC2	ENSVURP00010030434	ENSVURP00010003792	Uncharacterized protein.	Uncharacterized protein.	0.792
ARMC3	ENKUR	ENSVURP00010030434	ENSVURP00010032016	Uncharacterized protein.	Enkurin domain-containing protein.	0.834
ARMC3	ENSVURP00010006577	ENSVURP00010030434	ENSVURP00010006577	Uncharacterized protein.	annotation not available	0.904
ARMC3	ENSVURP00010008488	ENSVURP00010030434	ENSVURP00010008488	Uncharacterized protein.	Tubulin domain-containing protein.	0.752
ARMC3	ENSVURP00010010115	ENSVURP00010030434	ENSVURP00010010115	Uncharacterized protein.	Uncharacterized protein.	0.880
ARMC3	ENSVURP00010014386	ENSVURP00010030434	ENSVURP00010014386	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.752
ARMC3	ENSVURP00010014915	ENSVURP00010030434	ENSVURP00010014915	Uncharacterized protein.	Uncharacterized protein.	0.861
ARMC3	ENSVURP00010021191	ENSVURP00010030434	ENSVURP00010021191	Uncharacterized protein.	Uncharacterized protein.	0.803