12 items (Vombatus ursinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSVURP00010000165	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (410 aa)
	STMN4	Stathmin; Belongs to the stathmin family. (184 aa)
	TUBB	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family. (456 aa)
	TUBB4B	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (445 aa)
	ENSVURP00010008481	Tubulin domain-containing protein. (84 aa)
	LOC114037540	Tubulin-specific chaperone A; Belongs to the TBCA family. (76 aa)
	TTL	Uncharacterized protein. (380 aa)
	LOC114031783	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (446 aa)
	DCLK1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (433 aa)
	DCX	Uncharacterized protein. (406 aa)
	TUBE1	Uncharacterized protein; Belongs to the tubulin family. (476 aa)
	TUBA8	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (449 aa)

Your Current Organism:

Vombatus ursinus

NCBI taxonomy Id: 29139
Other names: V. ursinus, coarse-haired wombat, common wombat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCLK1	DCX	ENSVURP00010025672	ENSVURP00010027513	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.969
DCLK1	ENSVURP00010000165	ENSVURP00010025672	ENSVURP00010000165	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.914
DCLK1	ENSVURP00010008481	ENSVURP00010025672	ENSVURP00010008481	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Tubulin domain-containing protein.	0.914
DCLK1	LOC114031783	ENSVURP00010025672	ENSVURP00010022384	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.907
DCLK1	TUBA8	ENSVURP00010025672	ENSVURP00010031362	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.914
DCLK1	TUBB	ENSVURP00010025672	ENSVURP00010001899	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.907
DCLK1	TUBB4B	ENSVURP00010025672	ENSVURP00010008344	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.907
DCLK1	TUBE1	ENSVURP00010025672	ENSVURP00010029878	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein; Belongs to the tubulin family.	0.907
DCX	DCLK1	ENSVURP00010027513	ENSVURP00010025672	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.969
DCX	ENSVURP00010000165	ENSVURP00010027513	ENSVURP00010000165	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.846
DCX	ENSVURP00010008481	ENSVURP00010027513	ENSVURP00010008481	Uncharacterized protein.	Tubulin domain-containing protein.	0.846
DCX	LOC114031783	ENSVURP00010027513	ENSVURP00010022384	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.876
DCX	TUBA8	ENSVURP00010027513	ENSVURP00010031362	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.846
DCX	TUBB	ENSVURP00010027513	ENSVURP00010001899	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.856
DCX	TUBB4B	ENSVURP00010027513	ENSVURP00010008344	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.856
DCX	TUBE1	ENSVURP00010027513	ENSVURP00010029878	Uncharacterized protein.	Uncharacterized protein; Belongs to the tubulin family.	0.848
ENSVURP00010000165	DCLK1	ENSVURP00010000165	ENSVURP00010025672	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.914
ENSVURP00010000165	DCX	ENSVURP00010000165	ENSVURP00010027513	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.846
ENSVURP00010000165	LOC114031783	ENSVURP00010000165	ENSVURP00010022384	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.934
ENSVURP00010000165	LOC114037540	ENSVURP00010000165	ENSVURP00010010495	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin-specific chaperone A; Belongs to the TBCA family.	0.458