STRINGSTRING
ENSVURP00010013026 ENSVURP00010013026 CPSF2 CPSF2 ENSVURP00010002106 ENSVURP00010002106 ENSVURP00010002847 ENSVURP00010002847 CPSF7 CPSF7 CSTF2 CSTF2 LOC114030964 LOC114030964 ENSVURP00010005806 ENSVURP00010005806 CLP1 CLP1 PCF11 PCF11 FIP1L1 FIP1L1 ENSVURP00010015799 ENSVURP00010015799 WDR33 WDR33 CPSF4L CPSF4L CPSF3 CPSF3 ENSVURP00010021629 ENSVURP00010021629 LOC114031506 LOC114031506 NUDT21 NUDT21 CPSF4 CPSF4 ENSVURP00010024198 ENSVURP00010024198 CSTF1 CSTF1 ENSVURP00010028070 ENSVURP00010028070 SSU72 SSU72 CPSF6 CPSF6 CPSF1 CPSF1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ENSVURP00010013026Uncharacterized protein. (119 aa)
CPSF2Cleavage and polyadenylation specificity factor subunit 2. (782 aa)
ENSVURP00010002106Uncharacterized protein. (544 aa)
ENSVURP00010002847RRM domain-containing protein. (818 aa)
CPSF7RRM domain-containing protein. (486 aa)
CSTF2RRM domain-containing protein. (564 aa)
LOC114030964Uncharacterized protein. (1294 aa)
ENSVURP00010005806Uncharacterized protein. (209 aa)
CLP1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (426 aa)
PCF11CID domain-containing protein. (1692 aa)
FIP1L1Fip1 domain-containing protein. (583 aa)
ENSVURP00010015799Uncharacterized protein. (195 aa)
WDR33WD repeat domain 33. (1339 aa)
CPSF4LCleavage and polyadenylation specific factor 4 like. (165 aa)
CPSF3Uncharacterized protein. (674 aa)
ENSVURP00010021629Uncharacterized protein. (194 aa)
LOC114031506Uncharacterized protein. (1272 aa)
NUDT21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (227 aa)
CPSF4Uncharacterized protein. (269 aa)
ENSVURP00010024198annotation not available (1272 aa)
CSTF1WD_REPEATS_REGION domain-containing protein. (431 aa)
ENSVURP00010028070annotation not available (1294 aa)
SSU72Uncharacterized protein. (194 aa)
CPSF6RRM domain-containing protein. (588 aa)
CPSF1CPSF_A domain-containing protein. (1451 aa)
Your Current Organism:
Vombatus ursinus
NCBI taxonomy Id: 29139
Other names: V. ursinus, coarse-haired wombat, common wombat
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