14 items (Vombatus ursinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	QARS1	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (774 aa)
	EEF1E1	GST C-terminal domain-containing protein. (174 aa)
	AIMP1	tRNA-binding domain-containing protein. (319 aa)
	RARS1	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (661 aa)
	DARS1	AA_TRNA_LIGASE_II domain-containing protein. (563 aa)
	LARS1	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (1176 aa)
	MARS1	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (907 aa)
	ENSVURP00010030030	AA_TRNA_LIGASE_II domain-containing protein. (448 aa)
	LOC114030879	Lysine--tRNA ligase. (613 aa)
	ENSVURP00010025804	Uncharacterized protein. (321 aa)
	ENSVURP00010022295	annotation not available (1591 aa)
	LOC114052232	Uncharacterized protein. (242 aa)
	IARS1	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (1262 aa)
	LOC114049648	Uncharacterized protein. (1591 aa)

Your Current Organism:

Vombatus ursinus

NCBI taxonomy Id: 29139
Other names: V. ursinus, coarse-haired wombat, common wombat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIMP1	DARS1	ENSVURP00010004558	ENSVURP00010008985	tRNA-binding domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.991
AIMP1	EEF1E1	ENSVURP00010004558	ENSVURP00010004660	tRNA-binding domain-containing protein.	GST C-terminal domain-containing protein.	0.990
AIMP1	ENSVURP00010022295	ENSVURP00010004558	ENSVURP00010022295	tRNA-binding domain-containing protein.	annotation not available	0.999
AIMP1	ENSVURP00010025804	ENSVURP00010004558	ENSVURP00010025804	tRNA-binding domain-containing protein.	Uncharacterized protein.	0.991
AIMP1	ENSVURP00010030030	ENSVURP00010004558	ENSVURP00010030030	tRNA-binding domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.959
AIMP1	IARS1	ENSVURP00010004558	ENSVURP00010023561	tRNA-binding domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.995
AIMP1	LARS1	ENSVURP00010004558	ENSVURP00010011438	tRNA-binding domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.998
AIMP1	LOC114030879	ENSVURP00010004558	ENSVURP00010026111	tRNA-binding domain-containing protein.	Lysine--tRNA ligase.	0.959
AIMP1	LOC114049648	ENSVURP00010004558	ENSVURP00010013270	tRNA-binding domain-containing protein.	Uncharacterized protein.	0.999
AIMP1	LOC114052232	ENSVURP00010004558	ENSVURP00010023075	tRNA-binding domain-containing protein.	Uncharacterized protein.	0.991
AIMP1	MARS1	ENSVURP00010004558	ENSVURP00010030227	tRNA-binding domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.999
AIMP1	QARS1	ENSVURP00010004558	ENSVURP00010023954	tRNA-binding domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.997
AIMP1	RARS1	ENSVURP00010004558	ENSVURP00010002846	tRNA-binding domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.996
DARS1	AIMP1	ENSVURP00010008985	ENSVURP00010004558	AA_TRNA_LIGASE_II domain-containing protein.	tRNA-binding domain-containing protein.	0.991
DARS1	EEF1E1	ENSVURP00010008985	ENSVURP00010004660	AA_TRNA_LIGASE_II domain-containing protein.	GST C-terminal domain-containing protein.	0.981
DARS1	ENSVURP00010022295	ENSVURP00010008985	ENSVURP00010022295	AA_TRNA_LIGASE_II domain-containing protein.	annotation not available	0.999
DARS1	ENSVURP00010025804	ENSVURP00010008985	ENSVURP00010025804	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein.	0.973
DARS1	ENSVURP00010030030	ENSVURP00010008985	ENSVURP00010030030	AA_TRNA_LIGASE_II domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.958
DARS1	IARS1	ENSVURP00010008985	ENSVURP00010023561	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.988
DARS1	LARS1	ENSVURP00010008985	ENSVURP00010011438	AA_TRNA_LIGASE_II domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.987