16 items (Vombatus ursinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PATL1	PAT1 domain-containing protein. (767 aa)
	DDX6	Uncharacterized protein; Belongs to the DEAD box helicase family. (483 aa)
	DYNC1H1	Uncharacterized protein. (4648 aa)
	PATL2	PAT1 homolog 2. (523 aa)
	CNOT7	Uncharacterized protein. (285 aa)
	RC3H1	Uncharacterized protein. (1134 aa)
	LOC114046934	Uncharacterized protein. (463 aa)
	EIF4ENIF1	Uncharacterized protein. (994 aa)
	ENSVURP00010016858	Uncharacterized protein. (73 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (125 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	ENSVURP00010023571	annotation not available (463 aa)
	C19orf54	Uncharacterized protein. (296 aa)
	ATXN2	LsmAD domain-containing protein. (1108 aa)
	LSM3-2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	NOCT	Endo/exonuclease/phosphatase domain-containing protein. (452 aa)

Your Current Organism:

Vombatus ursinus

NCBI taxonomy Id: 29139
Other names: V. ursinus, coarse-haired wombat, common wombat

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATXN2	DDX6	ENSVURP00010031403	ENSVURP00010005422	LsmAD domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.963
ATXN2	ENSVURP00010023571	ENSVURP00010031403	ENSVURP00010023571	LsmAD domain-containing protein.	annotation not available	0.472
ATXN2	LOC114046934	ENSVURP00010031403	ENSVURP00010014062	LsmAD domain-containing protein.	Uncharacterized protein.	0.472
ATXN2	RC3H1	ENSVURP00010031403	ENSVURP00010007603	LsmAD domain-containing protein.	Uncharacterized protein.	0.624
C19orf54	DDX6	ENSVURP00010031254	ENSVURP00010005422	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.951
C19orf54	LSM4	ENSVURP00010031254	ENSVURP00010019647	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.990
C19orf54	PATL1	ENSVURP00010031254	ENSVURP00010000951	Uncharacterized protein.	PAT1 domain-containing protein.	0.972
C19orf54	PATL2	ENSVURP00010031254	ENSVURP00010005927	Uncharacterized protein.	PAT1 homolog 2.	0.972
CNOT7	DDX6	ENSVURP00010007219	ENSVURP00010005422	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.930
CNOT7	NOCT	ENSVURP00010007219	ENSVURP00010032194	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.911
CNOT7	PATL1	ENSVURP00010007219	ENSVURP00010000951	Uncharacterized protein.	PAT1 domain-containing protein.	0.935
CNOT7	PATL2	ENSVURP00010007219	ENSVURP00010005927	Uncharacterized protein.	PAT1 homolog 2.	0.902
CNOT7	RC3H1	ENSVURP00010007219	ENSVURP00010007603	Uncharacterized protein.	Uncharacterized protein.	0.840
DDX6	ATXN2	ENSVURP00010005422	ENSVURP00010031403	Uncharacterized protein; Belongs to the DEAD box helicase family.	LsmAD domain-containing protein.	0.963
DDX6	C19orf54	ENSVURP00010005422	ENSVURP00010031254	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.951
DDX6	CNOT7	ENSVURP00010005422	ENSVURP00010007219	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.930
DDX6	EIF4ENIF1	ENSVURP00010005422	ENSVURP00010014929	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.984
DDX6	ENSVURP00010016858	ENSVURP00010005422	ENSVURP00010016858	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.930
DDX6	ENSVURP00010023571	ENSVURP00010005422	ENSVURP00010023571	Uncharacterized protein; Belongs to the DEAD box helicase family.	annotation not available	0.985
DDX6	LOC114046934	ENSVURP00010005422	ENSVURP00010014062	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.985