(18 nodes) Exon-exon junction complex network (Vombatus ursinus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC114024774	Uncharacterized protein. (147 aa)
	SMG6	SMG6 nonsense mediated mRNA decay factor. (1407 aa)
	EIF4A3	Uncharacterized protein; Belongs to the DEAD box helicase family. (411 aa)
	UPF2	Uncharacterized protein. (1271 aa)
	UPF3B	Smg4_UPF3 domain-containing protein. (568 aa)
	UPF1	UPF1 RNA helicase and ATPase. (1129 aa)
	ENSVURP00010021853	Uncharacterized protein. (183 aa)
	ENSVURP00010028050	Uncharacterized protein. (127 aa)
	CCDC9	Uncharacterized protein. (521 aa)
	PYM1	Mago-bind domain-containing protein. (247 aa)
	LOC114043133	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
	R3HCC1	R3H domain and coiled-coil containing 1. (414 aa)
	ENSVURP00010001787	Uncharacterized protein. (171 aa)
	ENSVURP00010001802	annotation not available (174 aa)
	ENSVURP00010005221	Uncharacterized protein. (148 aa)
	CASC3	Btz domain-containing protein. (759 aa)
	ENSVURP00010008342	annotation not available (171 aa)
	ENSVURP00010008441	Uncharacterized protein. (118 aa)

Your Current Organism:

Vombatus ursinus

NCBI taxonomy Id: 29139
Other names: V. ursinus, coarse-haired wombat, common wombat

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CASC3	CCDC9	ENSVURP00010006722	ENSVURP00010029693	Btz domain-containing protein.	Uncharacterized protein.	0.485
CASC3	EIF4A3	ENSVURP00010006722	ENSVURP00010012846	Btz domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.999
CASC3	ENSVURP00010001787	ENSVURP00010006722	ENSVURP00010001787	Btz domain-containing protein.	Uncharacterized protein.	0.972
CASC3	ENSVURP00010001802	ENSVURP00010006722	ENSVURP00010001802	Btz domain-containing protein.	annotation not available	0.996
CASC3	ENSVURP00010005221	ENSVURP00010006722	ENSVURP00010005221	Btz domain-containing protein.	Uncharacterized protein.	0.985
CASC3	ENSVURP00010008342	ENSVURP00010006722	ENSVURP00010008342	Btz domain-containing protein.	annotation not available	0.972
CASC3	ENSVURP00010008441	ENSVURP00010006722	ENSVURP00010008441	Btz domain-containing protein.	Uncharacterized protein.	0.985
CASC3	ENSVURP00010028050	ENSVURP00010006722	ENSVURP00010028050	Btz domain-containing protein.	Uncharacterized protein.	0.985
CASC3	LOC114024774	ENSVURP00010006722	ENSVURP00010024458	Btz domain-containing protein.	Uncharacterized protein.	0.985
CASC3	LOC114043133	ENSVURP00010006722	ENSVURP00010000425	Btz domain-containing protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.996
CASC3	PYM1	ENSVURP00010006722	ENSVURP00010031056	Btz domain-containing protein.	Mago-bind domain-containing protein.	0.611
CASC3	SMG6	ENSVURP00010006722	ENSVURP00010010249	Btz domain-containing protein.	SMG6 nonsense mediated mRNA decay factor.	0.878
CASC3	UPF1	ENSVURP00010006722	ENSVURP00010019905	Btz domain-containing protein.	UPF1 RNA helicase and ATPase.	0.995
CASC3	UPF2	ENSVURP00010006722	ENSVURP00010018545	Btz domain-containing protein.	Uncharacterized protein.	0.985
CASC3	UPF3B	ENSVURP00010006722	ENSVURP00010019499	Btz domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.981
CCDC9	CASC3	ENSVURP00010029693	ENSVURP00010006722	Uncharacterized protein.	Btz domain-containing protein.	0.485
CCDC9	EIF4A3	ENSVURP00010029693	ENSVURP00010012846	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.866
CCDC9	ENSVURP00010005221	ENSVURP00010029693	ENSVURP00010005221	Uncharacterized protein.	Uncharacterized protein.	0.532
CCDC9	ENSVURP00010008441	ENSVURP00010029693	ENSVURP00010008441	Uncharacterized protein.	Uncharacterized protein.	0.532
CCDC9	ENSVURP00010028050	ENSVURP00010029693	ENSVURP00010028050	Uncharacterized protein.	Uncharacterized protein.	0.532