19 items (Vombatus ursinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSVURP00010022309	Uncharacterized protein. (1196 aa)
	CPEB3	Cytoplasmic polyadenylation element binding protein 3. (728 aa)
	LARP6	La ribonucleoprotein domain family member 6. (495 aa)
	FMR1	Uncharacterized protein. (631 aa)
	ENSVURP00010022295	annotation not available (1591 aa)
	DAZAP1	Uncharacterized protein. (407 aa)
	ENSVURP00010020881	annotation not available (588 aa)
	ARID5A	ARID domain-containing protein. (620 aa)
	LOC114049648	Uncharacterized protein. (1591 aa)
	DHX9	Uncharacterized protein. (1258 aa)
	CSDE1	Uncharacterized protein. (847 aa)
	TXNDC11	Thioredoxin domain-containing protein. (947 aa)
	LOC114046842	Uncharacterized protein. (1194 aa)
	METTL16	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...] (555 aa)
	ENSVURP00010008435	Uncharacterized protein. (650 aa)
	RC3H1	Uncharacterized protein. (1134 aa)
	ZC3H12A	Zinc finger CCCH-type containing 12A. (670 aa)
	ENSVURP00010001700	Uncharacterized protein. (588 aa)
	ENSVURP00010000291	Uncharacterized protein. (703 aa)

Your Current Organism:

Vombatus ursinus

NCBI taxonomy Id: 29139
Other names: V. ursinus, coarse-haired wombat, common wombat

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPEB3	FMR1	ENSVURP00010024817	ENSVURP00010023950	Cytoplasmic polyadenylation element binding protein 3.	Uncharacterized protein.	0.491
CSDE1	DHX9	ENSVURP00010012517	ENSVURP00010013064	Uncharacterized protein.	Uncharacterized protein.	0.530
CSDE1	LARP6	ENSVURP00010012517	ENSVURP00010024157	Uncharacterized protein.	La ribonucleoprotein domain family member 6.	0.550
DHX9	CSDE1	ENSVURP00010013064	ENSVURP00010012517	Uncharacterized protein.	Uncharacterized protein.	0.530
DHX9	ENSVURP00010022295	ENSVURP00010013064	ENSVURP00010022295	Uncharacterized protein.	annotation not available	0.464
DHX9	LOC114049648	ENSVURP00010013064	ENSVURP00010013270	Uncharacterized protein.	Uncharacterized protein.	0.464
ENSVURP00010022295	DHX9	ENSVURP00010022295	ENSVURP00010013064	annotation not available	Uncharacterized protein.	0.464
ENSVURP00010022295	LOC114049648	ENSVURP00010022295	ENSVURP00010013270	annotation not available	Uncharacterized protein.	0.999
ENSVURP00010022295	TXNDC11	ENSVURP00010022295	ENSVURP00010012175	annotation not available	Thioredoxin domain-containing protein.	0.419
ENSVURP00010022309	RC3H1	ENSVURP00010022309	ENSVURP00010007603	Uncharacterized protein.	Uncharacterized protein.	0.858
FMR1	CPEB3	ENSVURP00010023950	ENSVURP00010024817	Uncharacterized protein.	Cytoplasmic polyadenylation element binding protein 3.	0.491
LARP6	CSDE1	ENSVURP00010024157	ENSVURP00010012517	La ribonucleoprotein domain family member 6.	Uncharacterized protein.	0.550
LOC114046842	RC3H1	ENSVURP00010011726	ENSVURP00010007603	Uncharacterized protein.	Uncharacterized protein.	0.858
LOC114049648	DHX9	ENSVURP00010013270	ENSVURP00010013064	Uncharacterized protein.	Uncharacterized protein.	0.464
LOC114049648	ENSVURP00010022295	ENSVURP00010013270	ENSVURP00010022295	Uncharacterized protein.	annotation not available	0.999
LOC114049648	TXNDC11	ENSVURP00010013270	ENSVURP00010012175	Uncharacterized protein.	Thioredoxin domain-containing protein.	0.419
RC3H1	ENSVURP00010022309	ENSVURP00010007603	ENSVURP00010022309	Uncharacterized protein.	Uncharacterized protein.	0.858
RC3H1	LOC114046842	ENSVURP00010007603	ENSVURP00010011726	Uncharacterized protein.	Uncharacterized protein.	0.858
RC3H1	ZC3H12A	ENSVURP00010007603	ENSVURP00010003595	Uncharacterized protein.	Zinc finger CCCH-type containing 12A.	0.554
TXNDC11	ENSVURP00010022295	ENSVURP00010012175	ENSVURP00010022295	Thioredoxin domain-containing protein.	annotation not available	0.419