(9 nodes) Cardiac myofibril assembly network (Vombatus ursinus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NEB	Nebulin. (6353 aa)
	ENSVURP00010001006	Homeobox domain-containing protein. (293 aa)
	CSRP3	Uncharacterized protein. (193 aa)
	TCAP	Uncharacterized protein. (171 aa)
	SRF	MADS-box domain-containing protein. (508 aa)
	MEF2A	MADS-box domain-containing protein. (488 aa)
	PDGFRA	Platelet-derived growth factor receptor alpha; Tyrosine-protein kinase that acts as a cell-surface receptor for PDGFA, PDGFB and PDGFC and plays an essential role in the regulation of embryonic development, cell proliferation, survival and chemotaxis. Depending on the context, promotes or inhibits cell proliferation and cell migration. Plays an important role in the differentiation of bone marrow-derived mesenchymal stem cells. Required for normal skeleton development. (1086 aa)
	PROX1	Prospero domain-containing protein. (736 aa)
	NRAP	LIM zinc-binding domain-containing protein. (1732 aa)

Your Current Organism:

Vombatus ursinus

NCBI taxonomy Id: 29139
Other names: V. ursinus, coarse-haired wombat, common wombat

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSRP3	NEB	ENSVURP00010004686	ENSVURP00010025455	Uncharacterized protein.	Nebulin.	0.535
CSRP3	NRAP	ENSVURP00010004686	ENSVURP00010032819	Uncharacterized protein.	LIM zinc-binding domain-containing protein.	0.876
CSRP3	TCAP	ENSVURP00010004686	ENSVURP00010007693	Uncharacterized protein.	Uncharacterized protein.	0.876
ENSVURP00010001006	MEF2A	ENSVURP00010001006	ENSVURP00010011641	Homeobox domain-containing protein.	MADS-box domain-containing protein.	0.954
ENSVURP00010001006	SRF	ENSVURP00010001006	ENSVURP00010007772	Homeobox domain-containing protein.	MADS-box domain-containing protein.	0.605
MEF2A	ENSVURP00010001006	ENSVURP00010011641	ENSVURP00010001006	MADS-box domain-containing protein.	Homeobox domain-containing protein.	0.954
MEF2A	SRF	ENSVURP00010011641	ENSVURP00010007772	MADS-box domain-containing protein.	MADS-box domain-containing protein.	0.678
NEB	CSRP3	ENSVURP00010025455	ENSVURP00010004686	Nebulin.	Uncharacterized protein.	0.535
NEB	NRAP	ENSVURP00010025455	ENSVURP00010032819	Nebulin.	LIM zinc-binding domain-containing protein.	0.656
NEB	TCAP	ENSVURP00010025455	ENSVURP00010007693	Nebulin.	Uncharacterized protein.	0.732
NRAP	CSRP3	ENSVURP00010032819	ENSVURP00010004686	LIM zinc-binding domain-containing protein.	Uncharacterized protein.	0.876
NRAP	NEB	ENSVURP00010032819	ENSVURP00010025455	LIM zinc-binding domain-containing protein.	Nebulin.	0.656
NRAP	TCAP	ENSVURP00010032819	ENSVURP00010007693	LIM zinc-binding domain-containing protein.	Uncharacterized protein.	0.836
SRF	ENSVURP00010001006	ENSVURP00010007772	ENSVURP00010001006	MADS-box domain-containing protein.	Homeobox domain-containing protein.	0.605
SRF	MEF2A	ENSVURP00010007772	ENSVURP00010011641	MADS-box domain-containing protein.	MADS-box domain-containing protein.	0.678
TCAP	CSRP3	ENSVURP00010007693	ENSVURP00010004686	Uncharacterized protein.	Uncharacterized protein.	0.876
TCAP	NEB	ENSVURP00010007693	ENSVURP00010025455	Uncharacterized protein.	Nebulin.	0.732
TCAP	NRAP	ENSVURP00010007693	ENSVURP00010032819	Uncharacterized protein.	LIM zinc-binding domain-containing protein.	0.836