STRINGSTRING
ENSVURP00010000128 ENSVURP00010000128 DDX41 DDX41 LOC114043133 LOC114043133 XAB2 XAB2 SF3B3 SF3B3 SF3B2 SF3B2 ENSVURP00010001407 ENSVURP00010001407 SART1 SART1 ENSVURP00010001802 ENSVURP00010001802 PPIE PPIE SF3A3 SF3A3 LSM2 LSM2 ENSVURP00010003732 ENSVURP00010003732 ZCCHC8 ZCCHC8 WDR25 WDR25 PRPF19 PRPF19 SLU7 SLU7 LOC114031006 LOC114031006 ENSVURP00010005221 ENSVURP00010005221 PRPF4B PRPF4B ENSVURP00010005887 ENSVURP00010005887 ENSVURP00010006207 ENSVURP00010006207 LOC114043304 LOC114043304 SYF2 SYF2 ENSVURP00010006612 ENSVURP00010006612 CRNKL1 CRNKL1 SYNCRIP SYNCRIP ENSVURP00010007790 ENSVURP00010007790 DDX23 DDX23 ENSVURP00010008356 ENSVURP00010008356 ENSVURP00010008441 ENSVURP00010008441 SF3B6 SF3B6 LOC114049562 LOC114049562 RBM22 RBM22 PRPF8 PRPF8 ALYREF ALYREF EFTUD2 EFTUD2 AQR AQR PPIL3 PPIL3 SNRPA1 SNRPA1 PNN PNN TFIP11 TFIP11 BCAS2 BCAS2 EIF4A3 EIF4A3 SNRPD1 SNRPD1 LOC114031880 LOC114031880 CWC15 CWC15 SF3A1 SF3A1 CDC40 CDC40 ENSVURP00010014314 ENSVURP00010014314 LOC114040343 LOC114040343 ENSVURP00010015345 ENSVURP00010015345 SNRPG SNRPG PLRG1 PLRG1 WDR83 WDR83 SRSF1 SRSF1 LOC114045545 LOC114045545 DHX35 DHX35 PRPF6 PRPF6 ENSVURP00010019848 ENSVURP00010019848 ENSVURP00010019986 ENSVURP00010019986 SNRNP200 SNRNP200 DDX5 DDX5 ESS2 ESS2 ENSVURP00010020394 ENSVURP00010020394 SF3A2 SF3A2 LSM3 LSM3 LSM7 LSM7 ENSVURP00010020662 ENSVURP00010020662 SNRPB SNRPB ISY1 ISY1 SF3B1 SF3B1 BUD31 BUD31 SNRPD2 SNRPD2 ENSVURP00010024277 ENSVURP00010024277 LOC114024774 LOC114024774 SNRNP40 SNRNP40 DHX38 DHX38 SNRPD3 SNRPD3 PPWD1 PPWD1 CWC27 CWC27 MTREX MTREX ENSVURP00010028023 ENSVURP00010028023 ENSVURP00010028050 ENSVURP00010028050 ENSVURP00010028082 ENSVURP00010028082 PPIL2 PPIL2 ENSVURP00010029178 ENSVURP00010029178 ENSVURP00010029464 ENSVURP00010029464 ENSVURP00010029957 ENSVURP00010029957 SRRM1 SRRM1 ENSVURP00010030385 ENSVURP00010030385 HNRNPR HNRNPR C19orf54 C19orf54 SNRPF SNRPF LSM3-2 LSM3-2 HNRNPM HNRNPM CACTIN CACTIN
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ENSVURP00010000128G-patch domain-containing protein. (889 aa)
DDX41DEAD-box helicase 41. (671 aa)
LOC114043133RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
XAB2Uncharacterized protein. (864 aa)
SF3B3CPSF_A domain-containing protein. (1217 aa)
SF3B2SAP domain-containing protein. (896 aa)
ENSVURP00010001407MI domain-containing protein. (709 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (805 aa)
ENSVURP00010001802annotation not available (174 aa)
PPIEPeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
SF3A3Matrin-type domain-containing protein. (501 aa)
LSM2Sm domain-containing protein. (141 aa)
ENSVURP00010003732RRM domain-containing protein. (123 aa)
ZCCHC8CCHC-type domain-containing protein. (731 aa)
WDR25WD_REPEATS_REGION domain-containing protein. (549 aa)
PRPF19Uncharacterized protein. (504 aa)
SLU7Slu7 domain-containing protein. (586 aa)
LOC114031006Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (122 aa)
ENSVURP00010005221Uncharacterized protein. (148 aa)
PRPF4BProtein kinase domain-containing protein. (1038 aa)
ENSVURP00010005887Sm domain-containing protein. (87 aa)
ENSVURP00010006207Sm domain-containing protein. (92 aa)
LOC114043304Uncharacterized protein. (686 aa)
SYF2SYF2 pre-mRNA splicing factor. (295 aa)
ENSVURP00010006612Uncharacterized protein. (151 aa)
CRNKL1Uncharacterized protein. (687 aa)
SYNCRIPUncharacterized protein. (623 aa)
ENSVURP00010007790Uncharacterized protein. (290 aa)
DDX23Uncharacterized protein. (818 aa)
ENSVURP00010008356Uncharacterized protein. (405 aa)
ENSVURP00010008441Uncharacterized protein. (118 aa)
SF3B6RRM domain-containing protein. (170 aa)
LOC114049562Uncharacterized protein. (838 aa)
RBM22Uncharacterized protein. (420 aa)
PRPF8MPN domain-containing protein. (2335 aa)
ALYREFAly/REF export factor. (294 aa)
EFTUD2Elongation factor Tu GTP binding domain containing 2. (973 aa)
AQRRNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing. (1472 aa)
PPIL3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
SNRPA1LRRcap domain-containing protein. (255 aa)
PNNUncharacterized protein. (716 aa)
TFIP11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Intron turnover seems to proceed through reactions in two lariat-intron associated complexes termed Intron Large (IL) and Intron Small (IS). In cooperation with DHX15 seems to mediate the transition of the U2, U5 and U6 snRNP- containing IL complex to the snRNP-free IS complex leading to efficient debranching and turnover of excised introns. May play a role in the differentiation of ameloblasts and odontoblasts or in the forming of the enamel extrac [...] (834 aa)
BCAS2Uncharacterized protein. (225 aa)
EIF4A3Uncharacterized protein; Belongs to the DEAD box helicase family. (411 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (136 aa)
LOC114031880Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (119 aa)
CWC15Uncharacterized protein. (231 aa)
SF3A1Uncharacterized protein. (786 aa)
CDC40WD_REPEATS_REGION domain-containing protein. (579 aa)
ENSVURP00010014314annotation not available (889 aa)
LOC114040343Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
ENSVURP00010015345annotation not available (166 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
PLRG1WD_REPEATS_REGION domain-containing protein. (516 aa)
WDR83WD_REPEATS_REGION domain-containing protein. (316 aa)
SRSF1Uncharacterized protein. (254 aa)
LOC114045545Sm domain-containing protein. (86 aa)
DHX35Uncharacterized protein. (738 aa)
PRPF6Uncharacterized protein. (941 aa)
ENSVURP00010019848SKIP_SNW domain-containing protein. (501 aa)
ENSVURP00010019986Sm domain-containing protein. (100 aa)
SNRNP200Uncharacterized protein. (2136 aa)
DDX5Uncharacterized protein; Belongs to the DEAD box helicase family. (616 aa)
ESS2Ess-2 splicing factor homolog. (487 aa)
ENSVURP00010020394Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (74 aa)
SF3A2Matrin-type domain-containing protein. (547 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
LSM7Sm domain-containing protein. (103 aa)
ENSVURP00010020662annotation not available (838 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
ISY1Uncharacterized protein. (282 aa)
SF3B1SF3b1 domain-containing protein. (1303 aa)
BUD31Uncharacterized protein. (144 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (61 aa)
ENSVURP00010024277MI domain-containing protein. (907 aa)
LOC114024774Uncharacterized protein. (147 aa)
SNRNP40WD_REPEATS_REGION domain-containing protein. (361 aa)
DHX38Uncharacterized protein. (1230 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (126 aa)
PPWD1Uncharacterized protein. (644 aa)
CWC27Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (284 aa)
MTREXUncharacterized protein. (1033 aa)
ENSVURP00010028023annotation not available (122 aa)
ENSVURP00010028050Uncharacterized protein. (127 aa)
ENSVURP00010028082Uncharacterized protein. (1204 aa)
PPIL2Uncharacterized protein. (557 aa)
ENSVURP00010029178Uncharacterized protein. (353 aa)
ENSVURP00010029464SKIP_SNW domain-containing protein. (531 aa)
ENSVURP00010029957Uncharacterized protein. (72 aa)
SRRM1PWI domain-containing protein. (907 aa)
ENSVURP00010030385annotation not available (119 aa)
HNRNPRHeterogeneous nuclear ribonucleoprotein R. (615 aa)
C19orf54Uncharacterized protein. (296 aa)
SNRPFSm domain-containing protein. (86 aa)
LSM3-2U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
HNRNPMHeterogeneous nuclear ribonucleoprotein M. (693 aa)
CACTINUncharacterized protein. (779 aa)
Your Current Organism:
Vombatus ursinus
NCBI taxonomy Id: 29139
Other names: V. ursinus, coarse-haired wombat, common wombat
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