(9 nodes) Regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay network (Vombatus ursinus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APOBEC1	CMP/dCMP-type deaminase domain-containing protein. (230 aa)
	LOC114043133	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
	ENSVURP00010001802	annotation not available (174 aa)
	EIF4A3	Uncharacterized protein; Belongs to the DEAD box helicase family. (411 aa)
	SECISBP2	SECIS binding protein 2. (749 aa)
	DHX34	Uncharacterized protein. (1147 aa)
	NBAS	Uncharacterized protein. (2388 aa)
	CASC3	Btz domain-containing protein. (759 aa)
	A1CF	Uncharacterized protein. (591 aa)

Your Current Organism:

Vombatus ursinus

NCBI taxonomy Id: 29139
Other names: V. ursinus, coarse-haired wombat, common wombat

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1CF	APOBEC1	ENSVURP00010003723	ENSVURP00010023113	Uncharacterized protein.	CMP/dCMP-type deaminase domain-containing protein.	0.889
A1CF	EIF4A3	ENSVURP00010003723	ENSVURP00010012846	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.481
APOBEC1	A1CF	ENSVURP00010023113	ENSVURP00010003723	CMP/dCMP-type deaminase domain-containing protein.	Uncharacterized protein.	0.889
CASC3	DHX34	ENSVURP00010006722	ENSVURP00010029711	Btz domain-containing protein.	Uncharacterized protein.	0.927
CASC3	EIF4A3	ENSVURP00010006722	ENSVURP00010012846	Btz domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.999
CASC3	ENSVURP00010001802	ENSVURP00010006722	ENSVURP00010001802	Btz domain-containing protein.	annotation not available	0.996
CASC3	LOC114043133	ENSVURP00010006722	ENSVURP00010000425	Btz domain-containing protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.996
DHX34	CASC3	ENSVURP00010029711	ENSVURP00010006722	Uncharacterized protein.	Btz domain-containing protein.	0.927
DHX34	EIF4A3	ENSVURP00010029711	ENSVURP00010012846	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.957
DHX34	ENSVURP00010001802	ENSVURP00010029711	ENSVURP00010001802	Uncharacterized protein.	annotation not available	0.846
DHX34	LOC114043133	ENSVURP00010029711	ENSVURP00010000425	Uncharacterized protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.846
EIF4A3	A1CF	ENSVURP00010012846	ENSVURP00010003723	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.481
EIF4A3	CASC3	ENSVURP00010012846	ENSVURP00010006722	Uncharacterized protein; Belongs to the DEAD box helicase family.	Btz domain-containing protein.	0.999
EIF4A3	DHX34	ENSVURP00010012846	ENSVURP00010029711	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.957
EIF4A3	ENSVURP00010001802	ENSVURP00010012846	ENSVURP00010001802	Uncharacterized protein; Belongs to the DEAD box helicase family.	annotation not available	0.996
EIF4A3	LOC114043133	ENSVURP00010012846	ENSVURP00010000425	Uncharacterized protein; Belongs to the DEAD box helicase family.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.996
EIF4A3	SECISBP2	ENSVURP00010012846	ENSVURP00010015214	Uncharacterized protein; Belongs to the DEAD box helicase family.	SECIS binding protein 2.	0.478
ENSVURP00010001802	CASC3	ENSVURP00010001802	ENSVURP00010006722	annotation not available	Btz domain-containing protein.	0.996
ENSVURP00010001802	DHX34	ENSVURP00010001802	ENSVURP00010029711	annotation not available	Uncharacterized protein.	0.846
ENSVURP00010001802	EIF4A3	ENSVURP00010001802	ENSVURP00010012846	annotation not available	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.996