18 items (Vombatus ursinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSVURP00010022784	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (836 aa)
	RSPO2	Uncharacterized protein. (243 aa)
	FURIN	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (780 aa)
	ERBB2	Receptor protein-tyrosine kinase. (1255 aa)
	ERBB4	Receptor protein-tyrosine kinase. (1308 aa)
	RSPO1	Uncharacterized protein. (267 aa)
	INSR	Tyrosine-protein kinase receptor. (1374 aa)
	IGF1R	Tyrosine-protein kinase receptor. (1362 aa)
	PCSK6	Uncharacterized protein; Belongs to the peptidase S8 family. (911 aa)
	FRAS1	Uncharacterized protein. (3793 aa)
	CRELD1	Uncharacterized protein. (412 aa)
	EGFR	Receptor protein-tyrosine kinase. (1214 aa)
	INSRR	Tyrosine-protein kinase receptor. (1255 aa)
	ENSVURP00010021107	G_PROTEIN_RECEP_F3_4 domain-containing protein. (806 aa)
	PCSK4	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (773 aa)
	CRELD2	Uncharacterized protein. (370 aa)
	ERBB3	Protein kinase domain-containing protein. (1338 aa)
	RSPO3	Uncharacterized protein. (233 aa)

Your Current Organism:

Vombatus ursinus

NCBI taxonomy Id: 29139
Other names: V. ursinus, coarse-haired wombat, common wombat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EGFR	ERBB2	ENSVURP00010017895	ENSVURP00010007604	Receptor protein-tyrosine kinase.	Receptor protein-tyrosine kinase.	0.998
EGFR	ERBB3	ENSVURP00010017895	ENSVURP00010031011	Receptor protein-tyrosine kinase.	Protein kinase domain-containing protein.	0.991
EGFR	ERBB4	ENSVURP00010017895	ENSVURP00010004650	Receptor protein-tyrosine kinase.	Receptor protein-tyrosine kinase.	0.987
EGFR	IGF1R	ENSVURP00010017895	ENSVURP00010011242	Receptor protein-tyrosine kinase.	Tyrosine-protein kinase receptor.	0.953
EGFR	INSR	ENSVURP00010017895	ENSVURP00010001213	Receptor protein-tyrosine kinase.	Tyrosine-protein kinase receptor.	0.896
EGFR	INSRR	ENSVURP00010017895	ENSVURP00010018265	Receptor protein-tyrosine kinase.	Tyrosine-protein kinase receptor.	0.849
ENSVURP00010022784	FRAS1	ENSVURP00010022784	ENSVURP00010014105	P/Homo B domain-containing protein; Belongs to the peptidase S8 family.	Uncharacterized protein.	0.491
ERBB2	EGFR	ENSVURP00010007604	ENSVURP00010017895	Receptor protein-tyrosine kinase.	Receptor protein-tyrosine kinase.	0.998
ERBB2	ERBB3	ENSVURP00010007604	ENSVURP00010031011	Receptor protein-tyrosine kinase.	Protein kinase domain-containing protein.	0.995
ERBB2	ERBB4	ENSVURP00010007604	ENSVURP00010004650	Receptor protein-tyrosine kinase.	Receptor protein-tyrosine kinase.	0.993
ERBB2	IGF1R	ENSVURP00010007604	ENSVURP00010011242	Receptor protein-tyrosine kinase.	Tyrosine-protein kinase receptor.	0.981
ERBB2	INSR	ENSVURP00010007604	ENSVURP00010001213	Receptor protein-tyrosine kinase.	Tyrosine-protein kinase receptor.	0.932
ERBB2	INSRR	ENSVURP00010007604	ENSVURP00010018265	Receptor protein-tyrosine kinase.	Tyrosine-protein kinase receptor.	0.929
ERBB3	EGFR	ENSVURP00010031011	ENSVURP00010017895	Protein kinase domain-containing protein.	Receptor protein-tyrosine kinase.	0.991
ERBB3	ERBB2	ENSVURP00010031011	ENSVURP00010007604	Protein kinase domain-containing protein.	Receptor protein-tyrosine kinase.	0.995
ERBB3	ERBB4	ENSVURP00010031011	ENSVURP00010004650	Protein kinase domain-containing protein.	Receptor protein-tyrosine kinase.	0.886
ERBB3	IGF1R	ENSVURP00010031011	ENSVURP00010011242	Protein kinase domain-containing protein.	Tyrosine-protein kinase receptor.	0.797
ERBB3	INSR	ENSVURP00010031011	ENSVURP00010001213	Protein kinase domain-containing protein.	Tyrosine-protein kinase receptor.	0.734
ERBB3	INSRR	ENSVURP00010031011	ENSVURP00010018265	Protein kinase domain-containing protein.	Tyrosine-protein kinase receptor.	0.734
ERBB4	EGFR	ENSVURP00010004650	ENSVURP00010017895	Receptor protein-tyrosine kinase.	Receptor protein-tyrosine kinase.	0.987