24 items (Vombatus ursinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PLCH1	Phosphoinositide phospholipase C. (1685 aa)
	PLCL1	Phosphoinositide phospholipase C. (1096 aa)
	GDPD5	GP-PDE domain-containing protein. (595 aa)
	PLCZ1	Phosphoinositide phospholipase C. (657 aa)
	PLCL2	Phosphoinositide phospholipase C. (1130 aa)
	PLCH2	Phosphoinositide phospholipase C. (1489 aa)
	PLCXD3	PLCXc domain-containing protein. (322 aa)
	PLCD4	Phosphoinositide phospholipase C. (727 aa)
	ENSVURP00010003370	Phosphoinositide phospholipase C. (1544 aa)
	PLCB3	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. (1208 aa)
	LOC114052275	GP-PDE domain-containing protein. (331 aa)
	PLCB4	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. (1206 aa)
	PLCB1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. (1117 aa)
	GPCPD1	Glycerophosphocholine phosphodiesterase 1. (652 aa)
	PLCB2	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. (1187 aa)
	GDPD3	GP-PDE domain-containing protein. (406 aa)
	PLCD3	Phosphoinositide phospholipase C. (819 aa)
	GDPD1	GP-PDE domain-containing protein. (313 aa)
	GDPD2	GP-PDE domain-containing protein. (539 aa)
	PLCXD2	Phosphatidylinositol specific phospholipase C X domain containing 2. (329 aa)
	PLCG1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades. (1279 aa)
	PLCXD1	PLCXc domain-containing protein. (308 aa)
	PLCG2	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades. (1264 aa)
	PLCD1	Phosphoinositide phospholipase C. (784 aa)

Your Current Organism:

Vombatus ursinus

NCBI taxonomy Id: 29139
Other names: V. ursinus, coarse-haired wombat, common wombat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSVURP00010003370	PLCB1	ENSVURP00010003370	ENSVURP00010009918	Phosphoinositide phospholipase C.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.797
ENSVURP00010003370	PLCB2	ENSVURP00010003370	ENSVURP00010010651	Phosphoinositide phospholipase C.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.797
ENSVURP00010003370	PLCB3	ENSVURP00010003370	ENSVURP00010006262	Phosphoinositide phospholipase C.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.813
ENSVURP00010003370	PLCB4	ENSVURP00010003370	ENSVURP00010009825	Phosphoinositide phospholipase C.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.797
ENSVURP00010003370	PLCD1	ENSVURP00010003370	ENSVURP00010021797	Phosphoinositide phospholipase C.	Phosphoinositide phospholipase C.	0.791
ENSVURP00010003370	PLCG1	ENSVURP00010003370	ENSVURP00010018456	Phosphoinositide phospholipase C.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades.	0.804
ENSVURP00010003370	PLCG2	ENSVURP00010003370	ENSVURP00010021372	Phosphoinositide phospholipase C.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades.	0.804
ENSVURP00010003370	PLCH1	ENSVURP00010003370	ENSVURP00010022400	Phosphoinositide phospholipase C.	Phosphoinositide phospholipase C.	0.684
GDPD1	GDPD3	ENSVURP00010016398	ENSVURP00010011233	GP-PDE domain-containing protein.	GP-PDE domain-containing protein.	0.889
GDPD1	GPCPD1	ENSVURP00010016398	ENSVURP00010010217	GP-PDE domain-containing protein.	Glycerophosphocholine phosphodiesterase 1.	0.765
GDPD2	GPCPD1	ENSVURP00010016655	ENSVURP00010010217	GP-PDE domain-containing protein.	Glycerophosphocholine phosphodiesterase 1.	0.765
GDPD2	PLCD4	ENSVURP00010016655	ENSVURP00010002717	GP-PDE domain-containing protein.	Phosphoinositide phospholipase C.	0.465
GDPD3	GDPD1	ENSVURP00010011233	ENSVURP00010016398	GP-PDE domain-containing protein.	GP-PDE domain-containing protein.	0.889
GDPD3	GPCPD1	ENSVURP00010011233	ENSVURP00010010217	GP-PDE domain-containing protein.	Glycerophosphocholine phosphodiesterase 1.	0.765
GDPD5	GPCPD1	ENSVURP00010022199	ENSVURP00010010217	GP-PDE domain-containing protein.	Glycerophosphocholine phosphodiesterase 1.	0.777
GPCPD1	GDPD1	ENSVURP00010010217	ENSVURP00010016398	Glycerophosphocholine phosphodiesterase 1.	GP-PDE domain-containing protein.	0.765
GPCPD1	GDPD2	ENSVURP00010010217	ENSVURP00010016655	Glycerophosphocholine phosphodiesterase 1.	GP-PDE domain-containing protein.	0.765
GPCPD1	GDPD3	ENSVURP00010010217	ENSVURP00010011233	Glycerophosphocholine phosphodiesterase 1.	GP-PDE domain-containing protein.	0.765
GPCPD1	GDPD5	ENSVURP00010010217	ENSVURP00010022199	Glycerophosphocholine phosphodiesterase 1.	GP-PDE domain-containing protein.	0.777
GPCPD1	LOC114052275	ENSVURP00010010217	ENSVURP00010007165	Glycerophosphocholine phosphodiesterase 1.	GP-PDE domain-containing protein.	0.778