34 items (Vombatus ursinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EDC3	Uncharacterized protein. (506 aa)
	ATXN2L	LsmAD domain-containing protein. (1049 aa)
	LSM12	LSM12 homolog. (192 aa)
	ENSVURP00010009339	Sm domain-containing protein. (78 aa)
	SNRPG	Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
	SNRPE	Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (92 aa)
	LOC114045545	Sm domain-containing protein. (86 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (125 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	ENSVURP00010006207	Sm domain-containing protein. (92 aa)
	LSM11	LSM11, U7 small nuclear RNA associated. (355 aa)
	ENSVURP00010005887	Sm domain-containing protein. (87 aa)
	NAA38	N(alpha)-acetyltransferase 38, NatC auxiliary subunit. (126 aa)
	LSM10	Sm domain-containing protein. (123 aa)
	LSM2	Sm domain-containing protein. (141 aa)
	GEMIN6	Uncharacterized protein. (167 aa)
	ENSVURP00010001966	Sm domain-containing protein. (57 aa)
	GEMIN7	Gem nuclear organelle associated protein 7. (118 aa)
	ENSVURP00010019986	Sm domain-containing protein. (100 aa)
	ENSVURP00010020394	Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (74 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	LSM7	Sm domain-containing protein. (103 aa)
	SNRPB	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	LSM14B	Uncharacterized protein. (423 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	SNRPD3	Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (126 aa)
	ATXN2	LsmAD domain-containing protein. (1108 aa)
	SNRPF	Sm domain-containing protein. (86 aa)
	LSM3-2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	LOC114046934	Uncharacterized protein. (463 aa)
	LSM6	Sm domain-containing protein. (80 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation. (133 aa)
	LOC114031880	Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (119 aa)
	SNRPD1	Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (136 aa)

Your Current Organism:

Vombatus ursinus

NCBI taxonomy Id: 29139
Other names: V. ursinus, coarse-haired wombat, common wombat

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATXN2	ATXN2L	ENSVURP00010031403	ENSVURP00010010826	LsmAD domain-containing protein.	LsmAD domain-containing protein.	0.918
ATXN2	EDC3	ENSVURP00010031403	ENSVURP00010012911	LsmAD domain-containing protein.	Uncharacterized protein.	0.549
ATXN2	LOC114046934	ENSVURP00010031403	ENSVURP00010014062	LsmAD domain-containing protein.	Uncharacterized protein.	0.472
ATXN2	LSM12	ENSVURP00010031403	ENSVURP00010010664	LsmAD domain-containing protein.	LSM12 homolog.	0.993
ATXN2	LSM14B	ENSVURP00010031403	ENSVURP00010023758	LsmAD domain-containing protein.	Uncharacterized protein.	0.441
ATXN2	NAA38	ENSVURP00010031403	ENSVURP00010004707	LsmAD domain-containing protein.	N(alpha)-acetyltransferase 38, NatC auxiliary subunit.	0.881
ATXN2	SNRPB	ENSVURP00010031403	ENSVURP00010021763	LsmAD domain-containing protein.	Small nuclear ribonucleoprotein-associated protein.	0.881
ATXN2L	ATXN2	ENSVURP00010010826	ENSVURP00010031403	LsmAD domain-containing protein.	LsmAD domain-containing protein.	0.918
ATXN2L	EDC3	ENSVURP00010010826	ENSVURP00010012911	LsmAD domain-containing protein.	Uncharacterized protein.	0.549
ATXN2L	LOC114046934	ENSVURP00010010826	ENSVURP00010014062	LsmAD domain-containing protein.	Uncharacterized protein.	0.452
ATXN2L	LSM12	ENSVURP00010010826	ENSVURP00010010664	LsmAD domain-containing protein.	LSM12 homolog.	0.993
ATXN2L	LSM14B	ENSVURP00010010826	ENSVURP00010023758	LsmAD domain-containing protein.	Uncharacterized protein.	0.441
ATXN2L	NAA38	ENSVURP00010010826	ENSVURP00010004707	LsmAD domain-containing protein.	N(alpha)-acetyltransferase 38, NatC auxiliary subunit.	0.881
ATXN2L	SNRPB	ENSVURP00010010826	ENSVURP00010021763	LsmAD domain-containing protein.	Small nuclear ribonucleoprotein-associated protein.	0.881
EDC3	ATXN2	ENSVURP00010012911	ENSVURP00010031403	Uncharacterized protein.	LsmAD domain-containing protein.	0.549
EDC3	ATXN2L	ENSVURP00010012911	ENSVURP00010010826	Uncharacterized protein.	LsmAD domain-containing protein.	0.549
EDC3	ENSVURP00010009339	ENSVURP00010012911	ENSVURP00010009339	Uncharacterized protein.	Sm domain-containing protein.	0.772
EDC3	ENSVURP00010019986	ENSVURP00010012911	ENSVURP00010019986	Uncharacterized protein.	Sm domain-containing protein.	0.818
EDC3	LOC114046934	ENSVURP00010012911	ENSVURP00010014062	Uncharacterized protein.	Uncharacterized protein.	0.934
EDC3	LSM1	ENSVURP00010012911	ENSVURP00010013282	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation.	0.928