57 items (Vombatus ursinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSVURP00010032211	Serine/threonine-protein phosphatase. (309 aa)
	MAPK15	Mitogen-activated protein kinase 15. (545 aa)
	RPS6KA3	Ribosomal protein S6 kinase. (740 aa)
	SRF	MADS-box domain-containing protein. (508 aa)
	RPS6KA1	Ribosomal protein S6 kinase. (753 aa)
	EGR2	Uncharacterized protein. (475 aa)
	EGR4	Uncharacterized protein. (486 aa)
	FOSL1	BZIP domain-containing protein. (311 aa)
	CHD4	Uncharacterized protein. (1938 aa)
	ID4	BHLH domain-containing protein. (163 aa)
	MAPK11	Mitogen-activated protein kinase. (362 aa)
	SGK1	Non-specific serine/threonine protein kinase. (525 aa)
	RPS6KA4	Ribosomal protein S6 kinase. (778 aa)
	CREB1	Uncharacterized protein. (327 aa)
	ENSVURP00010007321	Uncharacterized protein. (59 aa)
	MAPK7	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (807 aa)
	ATF1	Uncharacterized protein. (313 aa)
	PPP2CA	Serine/threonine-protein phosphatase. (309 aa)
	MAPK3	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (380 aa)
	PPP2R1A	Uncharacterized protein. (589 aa)
	EGR1	Early growth response protein; Transcriptional regulator. Recognizes and binds to the DNA sequence 5'-GCG(T/G)GGGCG-3'(EGR-site) in the promoter region of target genes. Binds double-stranded target DNA, irrespective of the cytosine methylation status. Regulates the transcription of numerous target genes, and thereby plays an important role in regulating the response to growth factors, DNA damage, and ischemia. Plays a role in the regulation of cell survival, proliferation and cell death. Belongs to the EGR C2H2-type zinc-finger protein family. (559 aa)
	ENSVURP00010012020	BZIP domain-containing protein. (114 aa)
	FNBP4	Uncharacterized protein. (1047 aa)
	LOC114027938	GTP-binding protein; Belongs to the small GTPase superfamily. RGK family. (305 aa)
	ENSVURP00010013014	Uncharacterized protein. (77 aa)
	ID2	BHLH domain-containing protein. (134 aa)
	ENSVURP00010013724	annotation not available (305 aa)
	RPS6KA2	Ribosomal protein S6 kinase. (733 aa)
	ENSVURP00010015212	Protein kinase domain-containing protein. (364 aa)
	PPP2CB	Serine/threonine-protein phosphatase. (309 aa)
	ENSVURP00010015742	BHLH domain-containing protein. (241 aa)
	MAPKAPK2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (422 aa)
	JUNB	BZIP domain-containing protein. (360 aa)
	LYL1	LYL1 basic helix-loop-helix family member. (308 aa)
	ENSVURP00010017057	ETS domain-containing protein. (95 aa)
	LOC114031856	WRNPLPNID domain-containing protein. (956 aa)
	RPS6KA5	Ribosomal protein S6 kinase. (799 aa)
	ENSVURP00010017741	Protein kinase domain-containing protein. (369 aa)
	EGR3	Uncharacterized protein. (386 aa)
	JUND	JunD proto-oncogene, AP-1 transcription factor subunit. (307 aa)
	DUSP6	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (382 aa)
	DUSP7	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (378 aa)
	NAB1	Uncharacterized protein. (498 aa)
	LOC114034866	WRNPLPNID domain-containing protein. (943 aa)
	ARC	Arc_C domain-containing protein. (400 aa)
	MAPK14	Mitogen-activated protein kinase. (360 aa)
	PPP2R1B	Uncharacterized protein. (662 aa)
	RELCH	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing. (1212 aa)
	PPP4R4	Uncharacterized protein. (871 aa)
	DUSP3	Dual specificity protein phosphatase; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (182 aa)
	MAPK1	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (349 aa)
	ENSVURP00010029292	annotation not available (956 aa)
	ID3	BHLH domain-containing protein. (118 aa)
	NAB2	Uncharacterized protein. (519 aa)
	TRIB2	Protein kinase domain-containing protein. (343 aa)
	CREM	Uncharacterized protein. (332 aa)
	ASCL1	BHLH domain-containing protein. (249 aa)

Your Current Organism:

Vombatus ursinus

NCBI taxonomy Id: 29139
Other names: V. ursinus, coarse-haired wombat, common wombat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARC	CREB1	ENSVURP00010024174	ENSVURP00010006137	Arc_C domain-containing protein.	Uncharacterized protein.	0.461
ARC	EGR1	ENSVURP00010024174	ENSVURP00010012001	Arc_C domain-containing protein.	Early growth response protein; Transcriptional regulator. Recognizes and binds to the DNA sequence 5'-GCG(T/G)GGGCG-3'(EGR-site) in the promoter region of target genes. Binds double-stranded target DNA, irrespective of the cytosine methylation status. Regulates the transcription of numerous target genes, and thereby plays an important role in regulating the response to growth factors, DNA damage, and ischemia. Plays a role in the regulation of cell survival, proliferation and cell death. Belongs to the EGR C2H2-type zinc-finger protein family.	0.614
ARC	EGR2	ENSVURP00010024174	ENSVURP00010000472	Arc_C domain-containing protein.	Uncharacterized protein.	0.450
ARC	EGR3	ENSVURP00010024174	ENSVURP00010019591	Arc_C domain-containing protein.	Uncharacterized protein.	0.515
ARC	EGR4	ENSVURP00010024174	ENSVURP00010000673	Arc_C domain-containing protein.	Uncharacterized protein.	0.651
ARC	JUNB	ENSVURP00010024174	ENSVURP00010016293	Arc_C domain-containing protein.	BZIP domain-containing protein.	0.508
ARC	SRF	ENSVURP00010024174	ENSVURP00010007772	Arc_C domain-containing protein.	MADS-box domain-containing protein.	0.462
ASCL1	ATF1	ENSVURP00010031317	ENSVURP00010009306	BHLH domain-containing protein.	Uncharacterized protein.	0.551
ASCL1	CREB1	ENSVURP00010031317	ENSVURP00010006137	BHLH domain-containing protein.	Uncharacterized protein.	0.697
ASCL1	CREM	ENSVURP00010031317	ENSVURP00010031243	BHLH domain-containing protein.	Uncharacterized protein.	0.551
ASCL1	ENSVURP00010012020	ENSVURP00010031317	ENSVURP00010012020	BHLH domain-containing protein.	BZIP domain-containing protein.	0.551
ASCL1	ENSVURP00010013014	ENSVURP00010031317	ENSVURP00010013014	BHLH domain-containing protein.	Uncharacterized protein.	0.551
ASCL1	ID2	ENSVURP00010031317	ENSVURP00010013417	BHLH domain-containing protein.	BHLH domain-containing protein.	0.470
ASCL1	ID4	ENSVURP00010031317	ENSVURP00010002213	BHLH domain-containing protein.	BHLH domain-containing protein.	0.470
ATF1	ASCL1	ENSVURP00010009306	ENSVURP00010031317	Uncharacterized protein.	BHLH domain-containing protein.	0.551
ATF1	CREB1	ENSVURP00010009306	ENSVURP00010006137	Uncharacterized protein.	Uncharacterized protein.	0.902
ATF1	EGR1	ENSVURP00010009306	ENSVURP00010012001	Uncharacterized protein.	Early growth response protein; Transcriptional regulator. Recognizes and binds to the DNA sequence 5'-GCG(T/G)GGGCG-3'(EGR-site) in the promoter region of target genes. Binds double-stranded target DNA, irrespective of the cytosine methylation status. Regulates the transcription of numerous target genes, and thereby plays an important role in regulating the response to growth factors, DNA damage, and ischemia. Plays a role in the regulation of cell survival, proliferation and cell death. Belongs to the EGR C2H2-type zinc-finger protein family.	0.414
ATF1	EGR3	ENSVURP00010009306	ENSVURP00010019591	Uncharacterized protein.	Uncharacterized protein.	0.414
ATF1	ENSVURP00010015742	ENSVURP00010009306	ENSVURP00010015742	Uncharacterized protein.	BHLH domain-containing protein.	0.551
ATF1	ENSVURP00010032211	ENSVURP00010009306	ENSVURP00010032211	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.429