29 items (Vombatus ursinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	IRAK2	Uncharacterized protein. (649 aa)
	MAP2K3	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (337 aa)
	ENSVURP00010023509	Ubiquitin-like domain-containing protein. (84 aa)
	MAPKAPK3	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (395 aa)
	TAB3	Uncharacterized protein. (716 aa)
	ENSVURP00010022789	Ubiquitin-like domain-containing protein. (156 aa)
	UBE2N	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
	UBA52	Ubiquitin-like domain-containing protein. (128 aa)
	KXD1	KxDL domain-containing protein. (173 aa)
	MAPK14	Mitogen-activated protein kinase. (360 aa)
	MAP3K20	Uncharacterized protein. (797 aa)
	NOD2	Uncharacterized protein. (1012 aa)
	IRAK1	Protein kinase domain-containing protein. (727 aa)
	ENSVURP00010030086	annotation not available (950 aa)
	RPS27A	Ubiquitin-like domain-containing protein. (156 aa)
	MAP2K6	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (334 aa)
	MAPKAPK2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (422 aa)
	TRAF6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (540 aa)
	ENSVURP00010013848	Ubiquitin-like domain-containing protein. (127 aa)
	UBE2V1	UBIQUITIN_CONJUGAT_2 domain-containing protein. (147 aa)
	MAP3K7	Mitogen-activated protein kinase kinase kinase 7; Belongs to the protein kinase superfamily. STE Ser/Thr protein kinase family. MAP kinase kinase kinase subfamily. (607 aa)
	LOC114050514	Uncharacterized protein. (958 aa)
	ENSVURP00010023623	Ubiquitin-like domain-containing protein. (118 aa)
	LOC114038877	Ubiquitin-like domain-containing protein. (128 aa)
	RIPK2	Uncharacterized protein. (540 aa)
	TAB1	TGF-beta activated kinase 1 (MAP3K7) binding protein 1. (535 aa)
	TAB2	Uncharacterized protein. (694 aa)
	MAPK11	Mitogen-activated protein kinase. (362 aa)
	IKBKG	CCHC NOA-type domain-containing protein. (575 aa)

Your Current Organism:

Vombatus ursinus

NCBI taxonomy Id: 29139
Other names: V. ursinus, coarse-haired wombat, common wombat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSVURP00010013848	ENSVURP00010022789	ENSVURP00010013848	ENSVURP00010022789	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.994
ENSVURP00010013848	ENSVURP00010023509	ENSVURP00010013848	ENSVURP00010023509	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.994
ENSVURP00010013848	ENSVURP00010023623	ENSVURP00010013848	ENSVURP00010023623	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.994
ENSVURP00010013848	ENSVURP00010030086	ENSVURP00010013848	ENSVURP00010030086	Ubiquitin-like domain-containing protein.	annotation not available	0.906
ENSVURP00010013848	IKBKG	ENSVURP00010013848	ENSVURP00010024908	Ubiquitin-like domain-containing protein.	CCHC NOA-type domain-containing protein.	0.857
ENSVURP00010013848	IRAK1	ENSVURP00010013848	ENSVURP00010027891	Ubiquitin-like domain-containing protein.	Protein kinase domain-containing protein.	0.716
ENSVURP00010013848	IRAK2	ENSVURP00010013848	ENSVURP00010015066	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.716
ENSVURP00010013848	LOC114050514	ENSVURP00010013848	ENSVURP00010024408	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.906
ENSVURP00010013848	MAP3K20	ENSVURP00010013848	ENSVURP00010025425	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.746
ENSVURP00010013848	MAP3K7	ENSVURP00010013848	ENSVURP00010008778	Ubiquitin-like domain-containing protein.	Mitogen-activated protein kinase kinase kinase 7; Belongs to the protein kinase superfamily. STE Ser/Thr protein kinase family. MAP kinase kinase kinase subfamily.	0.757
ENSVURP00010013848	MAPK11	ENSVURP00010013848	ENSVURP00010002297	Ubiquitin-like domain-containing protein.	Mitogen-activated protein kinase.	0.611
ENSVURP00010013848	MAPK14	ENSVURP00010013848	ENSVURP00010025126	Ubiquitin-like domain-containing protein.	Mitogen-activated protein kinase.	0.611
ENSVURP00010013848	NOD2	ENSVURP00010013848	ENSVURP00010026239	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.846
ENSVURP00010013848	RIPK2	ENSVURP00010013848	ENSVURP00010006905	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.642
ENSVURP00010013848	RPS27A	ENSVURP00010013848	ENSVURP00010018583	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.994
ENSVURP00010013848	TAB2	ENSVURP00010013848	ENSVURP00010002520	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.962
ENSVURP00010013848	TAB3	ENSVURP00010013848	ENSVURP00010023012	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.927
ENSVURP00010013848	TRAF6	ENSVURP00010013848	ENSVURP00010015322	Ubiquitin-like domain-containing protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.969
ENSVURP00010013848	UBE2N	ENSVURP00010013848	ENSVURP00010019992	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.979
ENSVURP00010013848	UBE2V1	ENSVURP00010013848	ENSVURP00010024653	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.999