STRINGSTRING
THOC7 THOC7 CPSF1 CPSF1 DDX39A DDX39A CPSF6 CPSF6 SARNP SARNP U2AF1L4 U2AF1L4 U2AF1 U2AF1 ENSVURP00010030333 ENSVURP00010030333 SRRM1 SRRM1 ENSVURP00010029578 ENSVURP00010029578 ENSVURP00010028070 ENSVURP00010028070 ENSVURP00010028050 ENSVURP00010028050 ENSVURP00010027585 ENSVURP00010027585 PABPN1 PABPN1 DHX38 DHX38 SRSF6 SRSF6 ENSVURP00010025592 ENSVURP00010025592 SREK1 SREK1 SRSF3 SRSF3 SRSF4 SRSF4 ENSVURP00010024902 ENSVURP00010024902 ENSVURP00010024728 ENSVURP00010024728 LOC114024774 LOC114024774 CSTF1 CSTF1 ENSVURP00010024005 ENSVURP00010024005 ENSVURP00010023819 ENSVURP00010023819 CPSF4 CPSF4 LOC114031469 LOC114031469 NUDT21 NUDT21 NCBP2 NCBP2 LOC114049687 LOC114049687 ENSVURP00010022122 ENSVURP00010022122 ENSVURP00010021215 ENSVURP00010021215 ENSVURP00010021029 ENSVURP00010021029 CPSF3 CPSF3 C12orf50 C12orf50 ENSVURP00010019799 ENSVURP00010019799 SRSF1 SRSF1 ZC3H11A ZC3H11A SRSF11 SRSF11 ENSVURP00010017067 ENSVURP00010017067 CPSF4L CPSF4L WDR33 WDR33 NCBP1 NCBP1 ENSVURP00010014931 ENSVURP00010014931 CDC40 CDC40 THOC5 THOC5 FIP1L1 FIP1L1 LOC114031894 LOC114031894 ENSVURP00010013026 ENSVURP00010013026 EIF4A3 EIF4A3 RNPS1 RNPS1 ALYREF ALYREF POLDIP3 POLDIP3 FYTTD1 FYTTD1 SRSF9 SRSF9 PCF11 PCF11 ENSVURP00010008441 ENSVURP00010008441 CLP1 CLP1 CASC3 CASC3 ENSVURP00010006693 ENSVURP00010006693 ENSVURP00010005806 ENSVURP00010005806 THOC2 THOC2 LOC114030964 LOC114030964 ENSVURP00010005221 ENSVURP00010005221 ENSVURP00010005108 ENSVURP00010005108 SLU7 SLU7 CSTF2 CSTF2 CPSF7 CPSF7 CPSF2 CPSF2 LOC114043133 LOC114043133 THOC6 THOC6 ENSVURP00010001474 ENSVURP00010001474 ENSVURP00010001802 ENSVURP00010001802 DDX39B DDX39B SRSF7 SRSF7 PAPOLA PAPOLA U2AF2 U2AF2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
THOC7Uncharacterized protein. (204 aa)
CPSF1CPSF_A domain-containing protein. (1451 aa)
DDX39AUncharacterized protein. (427 aa)
CPSF6RRM domain-containing protein. (588 aa)
SARNPSAP domain-containing protein. (210 aa)
U2AF1L4Uncharacterized protein. (406 aa)
U2AF1Uncharacterized protein. (248 aa)
ENSVURP00010030333annotation not available (658 aa)
SRRM1PWI domain-containing protein. (907 aa)
ENSVURP00010029578annotation not available (276 aa)
ENSVURP00010028070annotation not available (1294 aa)
ENSVURP00010028050Uncharacterized protein. (127 aa)
ENSVURP00010027585Uncharacterized protein. (214 aa)
PABPN1RRM domain-containing protein. (306 aa)
DHX38Uncharacterized protein. (1230 aa)
SRSF6Uncharacterized protein. (341 aa)
ENSVURP00010025592RRM domain-containing protein. (100 aa)
SREK1RRM domain-containing protein. (497 aa)
SRSF3RRM domain-containing protein. (164 aa)
SRSF4Uncharacterized protein. (505 aa)
ENSVURP00010024902Uncharacterized protein. (66 aa)
ENSVURP00010024728annotation not available (156 aa)
LOC114024774Uncharacterized protein. (147 aa)
CSTF1WD_REPEATS_REGION domain-containing protein. (431 aa)
ENSVURP00010024005FoP_duplication domain-containing protein. (245 aa)
ENSVURP00010023819WD_REPEATS_REGION domain-containing protein. (344 aa)
CPSF4Uncharacterized protein. (269 aa)
LOC114031469Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
NUDT21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (227 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (157 aa)
LOC114049687FoP_duplication domain-containing protein. (276 aa)
ENSVURP00010022122Uncharacterized protein. (1093 aa)
ENSVURP00010021215Suf domain-containing protein. (518 aa)
ENSVURP00010021029RRM domain-containing protein. (111 aa)
CPSF3Uncharacterized protein. (674 aa)
C12orf50Chromosome 12 open reading frame 50. (414 aa)
ENSVURP00010019799Uncharacterized protein. (202 aa)
SRSF1Uncharacterized protein. (254 aa)
ZC3H11AUncharacterized protein. (820 aa)
SRSF11RRM domain-containing protein. (491 aa)
ENSVURP00010017067Suf domain-containing protein. (710 aa)
CPSF4LCleavage and polyadenylation specific factor 4 like. (165 aa)
WDR33WD repeat domain 33. (1339 aa)
NCBP1MIF4G domain-containing protein. (794 aa)
ENSVURP00010014931Uncharacterized protein. (188 aa)
CDC40WD_REPEATS_REGION domain-containing protein. (579 aa)
THOC5Uncharacterized protein. (683 aa)
FIP1L1Fip1 domain-containing protein. (583 aa)
LOC114031894Death domain-containing protein. (658 aa)
ENSVURP00010013026Uncharacterized protein. (119 aa)
EIF4A3Uncharacterized protein; Belongs to the DEAD box helicase family. (411 aa)
RNPS1RRM domain-containing protein. (305 aa)
ALYREFAly/REF export factor. (294 aa)
POLDIP3RRM domain-containing protein. (418 aa)
FYTTD1Uncharacterized protein. (313 aa)
SRSF9Uncharacterized protein. (239 aa)
PCF11CID domain-containing protein. (1692 aa)
ENSVURP00010008441Uncharacterized protein. (118 aa)
CLP1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (426 aa)
CASC3Btz domain-containing protein. (759 aa)
ENSVURP00010006693RRM domain-containing protein. (174 aa)
ENSVURP00010005806Uncharacterized protein. (209 aa)
THOC2Uncharacterized protein. (1601 aa)
LOC114030964Uncharacterized protein. (1294 aa)
ENSVURP00010005221Uncharacterized protein. (148 aa)
ENSVURP00010005108Uncharacterized protein. (103 aa)
SLU7Slu7 domain-containing protein. (586 aa)
CSTF2RRM domain-containing protein. (564 aa)
CPSF7RRM domain-containing protein. (486 aa)
CPSF2Cleavage and polyadenylation specificity factor subunit 2. (782 aa)
LOC114043133RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
THOC6THO complex 6. (388 aa)
ENSVURP00010001474RRM domain-containing protein. (236 aa)
ENSVURP00010001802annotation not available (174 aa)
DDX39BUncharacterized protein. (428 aa)
SRSF7Uncharacterized protein. (236 aa)
PAPOLAPoly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (738 aa)
U2AF2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (475 aa)
Your Current Organism:
Vombatus ursinus
NCBI taxonomy Id: 29139
Other names: V. ursinus, coarse-haired wombat, common wombat
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