STRINGSTRING
ENSVURP00010024728 ENSVURP00010024728 LOC114031469 LOC114031469 NUDT21 NUDT21 NCBP2 NCBP2 ENSVURP00010021215 ENSVURP00010021215 CPSF3 CPSF3 ENSVURP00010017067 ENSVURP00010017067 CPSF4L CPSF4L WDR33 WDR33 NCBP1 NCBP1 FIP1L1 FIP1L1 ENSVURP00010013026 ENSVURP00010013026 PCF11 PCF11 CLP1 CLP1 ENSVURP00010005806 ENSVURP00010005806 LOC114030964 LOC114030964 CSTF2 CSTF2 CPSF2 CPSF2 PAPOLA PAPOLA CPSF7 CPSF7 CPSF1 CPSF1 CPSF6 CPSF6 ENSVURP00010028070 ENSVURP00010028070 PABPN1 PABPN1 CPSF4 CPSF4 CSTF1 CSTF1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ENSVURP00010024728annotation not available (156 aa)
LOC114031469Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
NUDT21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (227 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (157 aa)
ENSVURP00010021215Suf domain-containing protein. (518 aa)
CPSF3Uncharacterized protein. (674 aa)
ENSVURP00010017067Suf domain-containing protein. (710 aa)
CPSF4LCleavage and polyadenylation specific factor 4 like. (165 aa)
WDR33WD repeat domain 33. (1339 aa)
NCBP1MIF4G domain-containing protein. (794 aa)
FIP1L1Fip1 domain-containing protein. (583 aa)
ENSVURP00010013026Uncharacterized protein. (119 aa)
PCF11CID domain-containing protein. (1692 aa)
CLP1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (426 aa)
ENSVURP00010005806Uncharacterized protein. (209 aa)
LOC114030964Uncharacterized protein. (1294 aa)
CSTF2RRM domain-containing protein. (564 aa)
CPSF2Cleavage and polyadenylation specificity factor subunit 2. (782 aa)
PAPOLAPoly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (738 aa)
CPSF7RRM domain-containing protein. (486 aa)
CPSF1CPSF_A domain-containing protein. (1451 aa)
CPSF6RRM domain-containing protein. (588 aa)
ENSVURP00010028070annotation not available (1294 aa)
PABPN1RRM domain-containing protein. (306 aa)
CPSF4Uncharacterized protein. (269 aa)
CSTF1WD_REPEATS_REGION domain-containing protein. (431 aa)
Your Current Organism:
Vombatus ursinus
NCBI taxonomy Id: 29139
Other names: V. ursinus, coarse-haired wombat, common wombat
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