17 items (Vombatus ursinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PAH	Uncharacterized protein. (449 aa)
	ENSVURP00010026097	Uncharacterized protein. (71 aa)
	TAT	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate. (454 aa)
	LOC114044891	Amine oxidase. (556 aa)
	ENSVURP00010021437	Amine oxidase. (527 aa)
	FAH	Fumarylacetoacetase. (419 aa)
	ENSVURP00010009453	Uncharacterized protein. (200 aa)
	GSTZ1	Uncharacterized protein; Belongs to the GST superfamily. (218 aa)
	IL4I1	Amine oxidase. (507 aa)
	PCBD2	Uncharacterized protein. (138 aa)
	ENSVURP00010014933	Uncharacterized protein. (70 aa)
	PCBD1	Uncharacterized protein. (104 aa)
	KYAT1	Aminotran_1_2 domain-containing protein. (456 aa)
	QDPR	Uncharacterized protein. (243 aa)
	ASRGL1	Uncharacterized protein. (347 aa)
	HPD	4-hydroxyphenylpyruvate dioxygenase. (356 aa)
	HGD	Uncharacterized protein. (446 aa)

Your Current Organism:

Vombatus ursinus

NCBI taxonomy Id: 29139
Other names: V. ursinus, coarse-haired wombat, common wombat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASRGL1	ENSVURP00010014933	ENSVURP00010003009	ENSVURP00010014933	Uncharacterized protein.	Uncharacterized protein.	0.669
ASRGL1	ENSVURP00010021437	ENSVURP00010003009	ENSVURP00010021437	Uncharacterized protein.	Amine oxidase.	0.823
ASRGL1	ENSVURP00010026097	ENSVURP00010003009	ENSVURP00010026097	Uncharacterized protein.	Uncharacterized protein.	0.669
ASRGL1	KYAT1	ENSVURP00010003009	ENSVURP00010017428	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.669
ASRGL1	TAT	ENSVURP00010003009	ENSVURP00010026119	Uncharacterized protein.	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	0.577
ENSVURP00010009453	ENSVURP00010014933	ENSVURP00010009453	ENSVURP00010014933	Uncharacterized protein.	Uncharacterized protein.	0.669
ENSVURP00010009453	ENSVURP00010021437	ENSVURP00010009453	ENSVURP00010021437	Uncharacterized protein.	Amine oxidase.	0.478
ENSVURP00010009453	ENSVURP00010026097	ENSVURP00010009453	ENSVURP00010026097	Uncharacterized protein.	Uncharacterized protein.	0.669
ENSVURP00010009453	KYAT1	ENSVURP00010009453	ENSVURP00010017428	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.669
ENSVURP00010009453	TAT	ENSVURP00010009453	ENSVURP00010026119	Uncharacterized protein.	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	0.573
ENSVURP00010014933	ASRGL1	ENSVURP00010014933	ENSVURP00010003009	Uncharacterized protein.	Uncharacterized protein.	0.669
ENSVURP00010014933	ENSVURP00010009453	ENSVURP00010014933	ENSVURP00010009453	Uncharacterized protein.	Uncharacterized protein.	0.669
ENSVURP00010014933	HGD	ENSVURP00010014933	ENSVURP00010003805	Uncharacterized protein.	Uncharacterized protein.	0.431
ENSVURP00010014933	HPD	ENSVURP00010014933	ENSVURP00010005500	Uncharacterized protein.	4-hydroxyphenylpyruvate dioxygenase.	0.804
ENSVURP00010014933	PAH	ENSVURP00010014933	ENSVURP00010031319	Uncharacterized protein.	Uncharacterized protein.	0.570
ENSVURP00010014933	QDPR	ENSVURP00010014933	ENSVURP00010003238	Uncharacterized protein.	Uncharacterized protein.	0.603
ENSVURP00010014933	TAT	ENSVURP00010014933	ENSVURP00010026119	Uncharacterized protein.	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	0.779
ENSVURP00010021437	ASRGL1	ENSVURP00010021437	ENSVURP00010003009	Amine oxidase.	Uncharacterized protein.	0.823
ENSVURP00010021437	ENSVURP00010009453	ENSVURP00010021437	ENSVURP00010009453	Amine oxidase.	Uncharacterized protein.	0.478
ENSVURP00010021437	HPD	ENSVURP00010021437	ENSVURP00010005500	Amine oxidase.	4-hydroxyphenylpyruvate dioxygenase.	0.821