10 items (Vombatus ursinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTPN1	Tyrosine-protein phosphatase non-receptor type. (423 aa)
	GHR	Fibronectin type-III domain-containing protein. (646 aa)
	PRL	Uncharacterized protein. (228 aa)
	LOC114053900	Tyrosine-protein kinase. (514 aa)
	JAK2	Tyrosine-protein kinase. (1132 aa)
	MAPK3	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (380 aa)
	LOC114050862	Uncharacterized protein. (215 aa)
	PRLR	Prolactin receptor; This is a receptor for the anterior pituitary hormone prolactin. (625 aa)
	ENSVURP00010026522	annotation not available (514 aa)
	MAPK1	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (349 aa)

Your Current Organism:

Vombatus ursinus

NCBI taxonomy Id: 29139
Other names: V. ursinus, coarse-haired wombat, common wombat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSVURP00010026522	GHR	ENSVURP00010026522	ENSVURP00010001270	annotation not available	Fibronectin type-III domain-containing protein.	0.723
ENSVURP00010026522	JAK2	ENSVURP00010026522	ENSVURP00010008779	annotation not available	Tyrosine-protein kinase.	0.795
ENSVURP00010026522	MAPK1	ENSVURP00010026522	ENSVURP00010028502	annotation not available	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.704
ENSVURP00010026522	MAPK3	ENSVURP00010026522	ENSVURP00010011204	annotation not available	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.705
ENSVURP00010026522	PRL	ENSVURP00010026522	ENSVURP00010001694	annotation not available	Uncharacterized protein.	0.478
ENSVURP00010026522	PRLR	ENSVURP00010026522	ENSVURP00010019819	annotation not available	Prolactin receptor; This is a receptor for the anterior pituitary hormone prolactin.	0.635
ENSVURP00010026522	PTPN1	ENSVURP00010026522	ENSVURP00010024638	annotation not available	Tyrosine-protein phosphatase non-receptor type.	0.751
GHR	ENSVURP00010026522	ENSVURP00010001270	ENSVURP00010026522	Fibronectin type-III domain-containing protein.	annotation not available	0.723
GHR	JAK2	ENSVURP00010001270	ENSVURP00010008779	Fibronectin type-III domain-containing protein.	Tyrosine-protein kinase.	0.993
GHR	LOC114050862	ENSVURP00010001270	ENSVURP00010013350	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.993
GHR	LOC114053900	ENSVURP00010001270	ENSVURP00010008333	Fibronectin type-III domain-containing protein.	Tyrosine-protein kinase.	0.723
GHR	PRL	ENSVURP00010001270	ENSVURP00010001694	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.918
GHR	PRLR	ENSVURP00010001270	ENSVURP00010019819	Fibronectin type-III domain-containing protein.	Prolactin receptor; This is a receptor for the anterior pituitary hormone prolactin.	0.866
GHR	PTPN1	ENSVURP00010001270	ENSVURP00010024638	Fibronectin type-III domain-containing protein.	Tyrosine-protein phosphatase non-receptor type.	0.777
JAK2	ENSVURP00010026522	ENSVURP00010008779	ENSVURP00010026522	Tyrosine-protein kinase.	annotation not available	0.795
JAK2	GHR	ENSVURP00010008779	ENSVURP00010001270	Tyrosine-protein kinase.	Fibronectin type-III domain-containing protein.	0.993
JAK2	LOC114050862	ENSVURP00010008779	ENSVURP00010013350	Tyrosine-protein kinase.	Uncharacterized protein.	0.838
JAK2	LOC114053900	ENSVURP00010008779	ENSVURP00010008333	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.795
JAK2	MAPK1	ENSVURP00010008779	ENSVURP00010028502	Tyrosine-protein kinase.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.706
JAK2	MAPK3	ENSVURP00010008779	ENSVURP00010011204	Tyrosine-protein kinase.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.706