(56 nodes) RNA polymerase network (Ancylostoma caninum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANCCAN_29552	Uncharacterized protein. (104 aa)
	ANCCAN_30251	Uncharacterized protein. (99 aa)
	ANCCAN_29353	RPOLD domain-containing protein. (123 aa)
	ANCCAN_29722	RNA polymerase III subunit RPC82 helix-turn-helix protein. (130 aa)
	ANCCAN_28530	Uncharacterized protein. (154 aa)
	ANCCAN_28817	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (333 aa)
	ANCCAN_26085	FFD and TFG box motif protein. (202 aa)
	ANCCAN_26606	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1067 aa)
	ANCCAN_24782	Uncharacterized protein. (240 aa)
	ANCCAN_26084	LSM14 domain-containing protein. (201 aa)
	ANCCAN_22616	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1911 aa)
	ANCCAN_23439	RNA polymerase Rpb3/Rpb11 dimerization domain protein. (120 aa)
	ANCCAN_21892	Transcription elongation factor S-II protein. (120 aa)
	ANCCAN_21727	Sin-like protein region. (372 aa)
	ANCCAN_21394	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1219 aa)
	ANCCAN_21891	Transcription elongation factor S-II. (199 aa)
	ANCCAN_17943	SAP30_Sin3_bdg domain-containing protein. (291 aa)
	ANCCAN_17515	Uncharacterized protein. (64 aa)
	ANCCAN_19310	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (148 aa)
	ANCCAN_18534	Endonuclease/exonuclease/phosphatase family protein. (510 aa)
	ANCCAN_15733	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (810 aa)
	ANCCAN_16799	RNA_pol_Rpb1_1 domain-containing protein. (112 aa)
	ANCCAN_15176	Uncharacterized protein. (162 aa)
	ANCCAN_16327	Endo/exonuclease/phosphatase domain-containing protein. (541 aa)
	ANCCAN_15212	Uncharacterized protein. (48 aa)
	ANCCAN_14289	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (261 aa)
	ANCCAN_12043	RWD domain protein. (1439 aa)
	ANCCAN_11566	RNA_pol_Rpb1_5 domain-containing protein. (90 aa)
	ANCCAN_11567	RNA_pol_Rpb1_5 domain-containing protein. (150 aa)
	ANCCAN_11568	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1505 aa)
	ANCCAN_10347	SAP30_Sin3_bdg domain-containing protein. (93 aa)
	ANCCAN_10166	Transcription factor S-II; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (260 aa)
	ANCCAN_09451	Peptidase family M41. (333 aa)
	ANCCAN_09276	RNA_pol_Rpb1_5 domain-containing protein. (90 aa)
	ANCCAN_09277	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1383 aa)
	ANCCAN_08118	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1130 aa)
	ANCCAN_07927	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1184 aa)
	ANCCAN_09172	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (285 aa)
	ANCCAN_07876	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1121 aa)
	ANCCAN_07587	Uncharacterized protein. (250 aa)
	ANCCAN_07230	Uncharacterized protein. (756 aa)
	ANCCAN_07231	Myb-like DNA-binding domain protein. (510 aa)
	ANCCAN_07275	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1331 aa)
	ANCCAN_07229	Uncharacterized protein. (1208 aa)
	ANCCAN_03688	Uncharacterized protein. (455 aa)
	ANCCAN_03562	RNA polymerase K / subunit. (128 aa)
	ANCCAN_01635	A49-like RNA polymerase I associated factor. (435 aa)
	ANCCAN_01455	RNA polymerase Rpb5 domain protein. (341 aa)
	ANCCAN_01112	RWD domain protein. (196 aa)
	ANCCAN_01110	RBR-type E3 ubiquitin transferase. (377 aa)
	ANCCAN_00710	DNA-directed RNA polymerase subunit N. (67 aa)
	ANCCAN_00572	CSL zinc finger. (83 aa)
	ANCCAN_01115	RBR-type E3 ubiquitin transferase. (179 aa)
	ANCCAN_01111	RBR-type E3 ubiquitin transferase. (93 aa)
	ANCCAN_00242	Uncharacterized protein. (425 aa)
	ANCCAN_00241	Uncharacterized protein. (81 aa)

Your Current Organism:

Ancylostoma caninum

NCBI taxonomy Id: 29170
Other names: A. caninum, dog hookworm

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANCCAN_00241	ANCCAN_00710	A0A368HEG3	A0A368H9C9	Uncharacterized protein.	DNA-directed RNA polymerase subunit N.	0.992
ANCCAN_00241	ANCCAN_01455	A0A368HEG3	A0A368H747	Uncharacterized protein.	RNA polymerase Rpb5 domain protein.	0.996
ANCCAN_00241	ANCCAN_03562	A0A368HEG3	A0A368H4X1	Uncharacterized protein.	RNA polymerase K / subunit.	0.994
ANCCAN_00241	ANCCAN_07275	A0A368HEG3	A0A368GUJ7	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.966
ANCCAN_00241	ANCCAN_07587	A0A368HEG3	A0A368GSZ3	Uncharacterized protein.	Uncharacterized protein.	0.960
ANCCAN_00241	ANCCAN_07876	A0A368HEG3	A0A368GP47	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.990
ANCCAN_00241	ANCCAN_07927	A0A368HEG3	A0A368GNW5	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.990
ANCCAN_00241	ANCCAN_08118	A0A368HEG3	A0A368GN81	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
ANCCAN_00241	ANCCAN_09172	A0A368HEG3	A0A368GP34	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.819
ANCCAN_00241	ANCCAN_09276	A0A368HEG3	A0A368GJY2	Uncharacterized protein.	RNA_pol_Rpb1_5 domain-containing protein.	0.992
ANCCAN_00241	ANCCAN_09277	A0A368HEG3	A0A368GJZ9	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.992
ANCCAN_00241	ANCCAN_10166	A0A368HEG3	A0A368GJH7	Uncharacterized protein.	Transcription factor S-II; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.970
ANCCAN_00241	ANCCAN_10347	A0A368HEG3	A0A368GIY5	Uncharacterized protein.	SAP30_Sin3_bdg domain-containing protein.	0.995
ANCCAN_00241	ANCCAN_11566	A0A368HEG3	A0A368GFL7	Uncharacterized protein.	RNA_pol_Rpb1_5 domain-containing protein.	0.992
ANCCAN_00241	ANCCAN_11567	A0A368HEG3	A0A368GGS8	Uncharacterized protein.	RNA_pol_Rpb1_5 domain-containing protein.	0.992
ANCCAN_00241	ANCCAN_11568	A0A368HEG3	A0A368GHD2	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.992
ANCCAN_00241	ANCCAN_14289	A0A368HEG3	A0A368GAJ0	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.819
ANCCAN_00241	ANCCAN_15176	A0A368HEG3	A0A368G394	Uncharacterized protein.	Uncharacterized protein.	0.597
ANCCAN_00241	ANCCAN_15212	A0A368HEG3	A0A368G844	Uncharacterized protein.	Uncharacterized protein.	0.425
ANCCAN_00241	ANCCAN_15733	A0A368HEG3	A0A368G1N6	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.513