(9 nodes) Acetoin catabolic process network (Burkholderia cepacia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOI82714.1	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (638 aa)
	BkdA1	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)
	BkdA2	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)
	acoC_1	Acetoin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (371 aa)
	AcoB	Pyruvate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	acoA	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)
	AOI82713.1	ATP-NAD kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)
	AOI86396.1	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (634 aa)
	AOI86546.1	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (672 aa)

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, Burkholderia sp. Bp7081, Burkholderia sp. Bp7091, Burkholderia sp. Bp7098, Burkholderia sp. Bp7108, Burkholderia sp. Bp7432, Burkholderia sp. LK29, Burkholderia sp. NCIM 5465, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOI82713.1	AcoB	WI67_09800	WI67_09785	ATP-NAD kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.875
AOI82713.1	BkdA1	WI67_09800	WI67_06025	ATP-NAD kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
AOI82713.1	BkdA2	WI67_09800	WI67_06030	ATP-NAD kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
AOI82713.1	acoA	WI67_09800	WI67_09790	ATP-NAD kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AOI82713.1	acoC_1	WI67_09800	WI67_09780	ATP-NAD kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetoin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.887
AcoB	AOI82713.1	WI67_09785	WI67_09800	Pyruvate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-NAD kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.875
AcoB	BkdA1	WI67_09785	WI67_06025	Pyruvate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AcoB	acoA	WI67_09785	WI67_09790	Pyruvate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AcoB	acoC_1	WI67_09785	WI67_09780	Pyruvate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetoin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
BkdA1	AOI82713.1	WI67_06025	WI67_09800	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-NAD kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
BkdA1	AcoB	WI67_06025	WI67_09785	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
BkdA1	BkdA2	WI67_06025	WI67_06030	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
BkdA1	acoC_1	WI67_06025	WI67_09780	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetoin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
BkdA2	AOI82713.1	WI67_06030	WI67_09800	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-NAD kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
BkdA2	BkdA1	WI67_06030	WI67_06025	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
BkdA2	acoA	WI67_06030	WI67_09790	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
BkdA2	acoC_1	WI67_06030	WI67_09780	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetoin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.872
acoA	AOI82713.1	WI67_09790	WI67_09800	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-NAD kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
acoA	AcoB	WI67_09790	WI67_09785	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
acoA	BkdA2	WI67_09790	WI67_06030	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999

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