(43 nodes) MetI-like superfamily network (Ruegeria sp. TM1040)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ABF63162.1	Binding-protein-dependent transport systems inner membrane component. (276 aa)
	ABF63994.1	Phosphate ABC transporter permease protein PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (492 aa)
	ABF63993.1	Phosphate transport system permease protein 2. (455 aa)
	ugpE	Binding-protein-dependent transport systems inner membrane component; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane. (283 aa)
	ABF63583.1	Binding-protein-dependent transport systems inner membrane component. (293 aa)
	ABF63570.1	Binding-protein-dependent transport systems inner membrane component. (310 aa)
	ABF63569.1	Spermidine/putrescine ABC transporter; permease protein. (266 aa)
	ABF63447.1	Binding-protein-dependent transport systems inner membrane component. (335 aa)
	ABF63446.1	Binding-protein-dependent transport systems inner membrane component. (330 aa)
	ABF63276.1	Binding-protein-dependent transport systems inner membrane component. (568 aa)
	ABF63197.1	Amino acid ABC transporter permease protein 3-TM region His/Glu/Gln/Arg/opine. (268 aa)
	ABF63163.1	Binding-protein-dependent transport systems inner membrane component. (288 aa)
	ABF64151.1	Oligopeptide/dipeptide ABC transporter; permease protein. (350 aa)
	ABF63058.1	Binding-protein-dependent transport systems inner membrane component. (273 aa)
	ABF63057.1	Binding-protein-dependent transport systems inner membrane component. (295 aa)
	ABF63029.1	Amino acid ABC transporter permease protein 3-TM region His/Glu/Gln/Arg/opine. (442 aa)
	ABF63028.1	Amino acid ABC transporter permease protein 3-TM region His/Glu/Gln/Arg/opine. (422 aa)
	ABF62855.1	Binding-protein-dependent transport systems inner membrane component. (559 aa)
	ABF62770.1	Binding-protein-dependent transport systems inner membrane component. (352 aa)
	ABF65417.1	Binding-protein-dependent transport systems inner membrane component. (315 aa)
	ABF64984.1	ABC transporter fused inner membrane subunits. (565 aa)
	ABF64555.1	Binding-protein-dependent transport systems inner membrane component. (271 aa)
	ABF64554.1	Binding-protein-dependent transport systems inner membrane component. (318 aa)
	ABF64447.1	Amino acid ABC transporter permease protein 3-TM region His/Glu/Gln/Arg/opine. (268 aa)
	ABF64446.1	Binding-protein-dependent transport systems inner membrane component. (302 aa)
	ABF64228.1	Binding-protein-dependent transport systems inner membrane component. (305 aa)
	ABF64227.1	Binding-protein-dependent transport systems inner membrane component. (281 aa)
	ABF64152.1	Binding-protein-dependent transport systems inner membrane component. (478 aa)
	ABF65447.1	Binding-protein-dependent transport systems inner membrane component. (383 aa)
	ABF65722.1	Binding-protein-dependent transport systems inner membrane component. (391 aa)
	ABF65448.1	Binding-protein-dependent transport systems inner membrane component. (301 aa)
	ABF65475.1	Binding-protein-dependent transport systems inner membrane component. (302 aa)
	ABF62769.1	Binding-protein-dependent transport systems inner membrane component. (305 aa)
	ABF65476.1	Binding-protein-dependent transport systems inner membrane component. (344 aa)
	ABF65549.1	Binding-protein-dependent transport systems inner membrane component. (523 aa)
	ABF65713.1	Binding-protein-dependent transport systems inner membrane component. (272 aa)
	ABF65721.1	Binding-protein-dependent transport systems inner membrane component. (541 aa)
	ABF65714.1	Binding-protein-dependent transport systems inner membrane component. (293 aa)
	ABF65151.1	Binding-protein-dependent transport systems inner membrane component. (287 aa)
	ABF65152.1	Binding-protein-dependent transport systems inner membrane component. (265 aa)
	ABF65282.1	Binding-protein-dependent transport systems inner membrane component. (368 aa)
	ABF65283.1	Binding-protein-dependent transport systems inner membrane component. (362 aa)
	ABF65416.1	Oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein; Belongs to the binding-protein-dependent transport system permease family. (627 aa)

Your Current Organism:

Ruegeria sp. TM1040

NCBI taxonomy Id: 292414
Other names: R. sp. TM1040, Silicibacter sp. TM1040

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABF62769.1	ABF62770.1	TM1040_0036	TM1040_0037	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.968
ABF62769.1	ABF63447.1	TM1040_0036	TM1040_0714	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.805
ABF62769.1	ABF64151.1	TM1040_0036	TM1040_1418	Binding-protein-dependent transport systems inner membrane component.	Oligopeptide/dipeptide ABC transporter; permease protein.	0.587
ABF62769.1	ABF64554.1	TM1040_0036	TM1040_1821	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.833
ABF62769.1	ABF65416.1	TM1040_0036	TM1040_2684	Binding-protein-dependent transport systems inner membrane component.	Oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein; Belongs to the binding-protein-dependent transport system permease family.	0.489
ABF62769.1	ABF65417.1	TM1040_0036	TM1040_2685	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.854
ABF62769.1	ABF65447.1	TM1040_0036	TM1040_2715	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.867
ABF62769.1	ABF65476.1	TM1040_0036	TM1040_2744	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.791
ABF62770.1	ABF62769.1	TM1040_0037	TM1040_0036	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.968
ABF62770.1	ABF63446.1	TM1040_0037	TM1040_0713	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.788
ABF62770.1	ABF64152.1	TM1040_0037	TM1040_1419	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.506
ABF62770.1	ABF64555.1	TM1040_0037	TM1040_1822	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.803
ABF62770.1	ABF65416.1	TM1040_0037	TM1040_2684	Binding-protein-dependent transport systems inner membrane component.	Oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein; Belongs to the binding-protein-dependent transport system permease family.	0.866
ABF62770.1	ABF65448.1	TM1040_0037	TM1040_2716	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.867
ABF62770.1	ABF65475.1	TM1040_0037	TM1040_2743	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.767
ABF62855.1	ABF63276.1	TM1040_0122	TM1040_0543	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.909
ABF63028.1	ABF63029.1	TM1040_0295	TM1040_0296	Amino acid ABC transporter permease protein 3-TM region His/Glu/Gln/Arg/opine.	Amino acid ABC transporter permease protein 3-TM region His/Glu/Gln/Arg/opine.	0.998
ABF63028.1	ABF63197.1	TM1040_0295	TM1040_0464	Amino acid ABC transporter permease protein 3-TM region His/Glu/Gln/Arg/opine.	Amino acid ABC transporter permease protein 3-TM region His/Glu/Gln/Arg/opine.	0.689
ABF63028.1	ABF64447.1	TM1040_0295	TM1040_1714	Amino acid ABC transporter permease protein 3-TM region His/Glu/Gln/Arg/opine.	Amino acid ABC transporter permease protein 3-TM region His/Glu/Gln/Arg/opine.	0.851
ABF63029.1	ABF63028.1	TM1040_0296	TM1040_0295	Amino acid ABC transporter permease protein 3-TM region His/Glu/Gln/Arg/opine.	Amino acid ABC transporter permease protein 3-TM region His/Glu/Gln/Arg/opine.	0.998