STRINGSTRING
dapB dapB ABF62840.1 ABF62840.1 dapA dapA ABF62895.1 ABF62895.1 metK metK aroA aroA trpF trpF trpB trpB trpA trpA ABF63019.1 ABF63019.1 argB argB aroQ aroQ ABF63150.1 ABF63150.1 ABF63210.1 ABF63210.1 ABF63237.1 ABF63237.1 ABF63238.1 ABF63238.1 ABF63243.1 ABF63243.1 ABF63258.1 ABF63258.1 ABF63285.1 ABF63285.1 ABF63287.1 ABF63287.1 proC proC argD argD argF argF ABF63450.1 ABF63450.1 tpiA tpiA ABF63607.1 ABF63607.1 ABF63608.1 ABF63608.1 eno eno ABF63739.1 ABF63739.1 ABF63755.1 ABF63755.1 ABF63759.1 ABF63759.1 hisA1 hisA1 ABF63808.1 ABF63808.1 pgk pgk ABF63844.1 ABF63844.1 ABF63846.1 ABF63846.1 argC argC gltA gltA trpC trpC trpD trpD ABF63874.1 ABF63874.1 trpE trpE ABF63887.1 ABF63887.1 ABF63896.1 ABF63896.1 ABF63898.1 ABF63898.1 ABF63919.1 ABF63919.1 ABF63926.1 ABF63926.1 proB proB proA proA ABF64002.1 ABF64002.1 metAA metAA hisI hisI aroK aroK aroB aroB cysK cysK ABF64201.1 ABF64201.1 ABF64263.1 ABF64263.1 glyA glyA ABF64327.1 ABF64327.1 ABF64467.1 ABF64467.1 ABF64569.1 ABF64569.1 ABF64571.1 ABF64571.1 ABF64665.1 ABF64665.1 ABF64667.1 ABF64667.1 rpiA rpiA ABF64694.1 ABF64694.1 ABF64708.1 ABF64708.1 ABF64713.1 ABF64713.1 ABF64760.1 ABF64760.1 hisB hisB hisH hisH hisA2 hisA2 hisF hisF hisE hisE prs prs ABF64832.1 ABF64832.1 hisC hisC ABF64896.1 ABF64896.1 leuA leuA ilvC ilvC ABF65046.1 ABF65046.1 ABF65062.1 ABF65062.1 tal tal ABF65126.1 ABF65126.1 ilvD ilvD leuC leuC leuD leuD ABF65248.1 ABF65248.1 ABF65286.1 ABF65286.1 ABF65313.1 ABF65313.1 ABF65338.1 ABF65338.1 ABF65367.1 ABF65367.1 ABF65432.1 ABF65432.1 gpmI gpmI ABF65515.1 ABF65515.1 dapF dapF aroC aroC ABF65554.1 ABF65554.1 ABF65555.1 ABF65555.1 aroE aroE argG argG ilvA ilvA argJ argJ ilvE ilvE dapE1 dapE1 dapD dapD ABF65743.1 ABF65743.1 ABF65751.1 ABF65751.1 ABF65752.1 ABF65752.1 ABF65753.1 ABF65753.1
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
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a 3D structure is known or predicted
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dapBDihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. (269 aa)
ABF62840.1Saccharopine dehydrogenase (NAD+, L-lysine-forming). (350 aa)
dapADihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (299 aa)
ABF62895.1L-threonine aldolase. (367 aa)
metKMethionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. (393 aa)
aroA3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. (450 aa)
trpFPhosphoribosylanthranilate isomerase; Belongs to the TrpF family. (215 aa)
trpBTryptophan synthase, beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. (419 aa)
trpATryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. (284 aa)
ABF63019.13-deoxy-D-arabinoheptulosonate-7-phosphate synthase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP). (364 aa)
argBN-acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. (286 aa)
aroQ3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. (146 aa)
ABF63150.1Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (334 aa)
ABF63210.1Isocitrate dehydrogenase NADP-dependent; Belongs to the monomeric-type IDH family. (738 aa)
ABF63237.1ATP phosphoribosyltransferase regulatory subunit. (363 aa)
ABF63238.1ATP phosphoribosyltransferase catalytic subunit; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. (230 aa)
ABF63243.1Serine O-acetyltransferase. (259 aa)
ABF63258.1Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (332 aa)
ABF63285.1Aminotransferase; Catalyzes reversively the conversion of L-aspartate beta- semialdehyde (ASA) to L-2,4-diaminobutyrate (DABA) by transamination with L-glutamate; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (428 aa)
ABF63287.1Aspartate kinase. (478 aa)
proCPyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. (271 aa)
argDAcetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (391 aa)
argFOrnithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. (308 aa)
ABF63450.1Acetylornithine deacetylase ArgE. Metallo peptidase. MEROPS family M20A / acetylornithine deacetylase. (388 aa)
tpiATriosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. (246 aa)
ABF63607.1Acetolactate synthase, small subunit. (186 aa)
ABF63608.1Acetolactate synthase, large subunit. (583 aa)
enoEnolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (425 aa)
ABF63739.1Aconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (915 aa)
ABF63755.1L-glutamine synthetase. (468 aa)
ABF63759.1Aconitase. (929 aa)
hisA1Histidine biosynthesis. (247 aa)
ABF63808.1Serine O-acetyltransferase. (268 aa)
pgkPhosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. (396 aa)
ABF63844.1Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (333 aa)
ABF63846.1Transketolase; Belongs to the transketolase family. (673 aa)
argCN-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. (342 aa)
gltACitrate synthase; Belongs to the citrate synthase family. (431 aa)
trpCIndole-3-glycerol phosphate synthase; Belongs to the TrpC family. (269 aa)
trpDAnthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). (340 aa)
ABF63874.1Anthranilate synthase, component II. (193 aa)
trpEAnthranilate synthase, component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concent [...] (503 aa)
ABF63887.12-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. (542 aa)
ABF63896.1Ornithine cyclodeaminase. (348 aa)
ABF63898.1Arginase; Belongs to the arginase family. (309 aa)
ABF63919.1Pterin-binding enzyme domain protein. (352 aa)
ABF63926.1Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase. (278 aa)
proBGlutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. (368 aa)
proAGlutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. (434 aa)
ABF64002.13-deoxy-D-arabinoheptulosonate-7-phosphate synthase. (456 aa)
metAAHomoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family. (312 aa)
hisIphosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP. (129 aa)
aroKShikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. (196 aa)
aroB3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family. (373 aa)
cysKCysteine synthase. (394 aa)
ABF64201.1Homocysteine S-methyltransferase. (340 aa)
ABF64263.1Thiamine pyrophosphate enzyme-like TPP-binding; Belongs to the TPP enzyme family. (537 aa)
glyASerine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (431 aa)
ABF64327.1Dihydrodipicolinate synthetase; Belongs to the DapA family. (317 aa)
ABF64467.1Aminotransferase. (400 aa)
ABF64569.1L-glutamine synthetase. (439 aa)
ABF64571.1L-glutamine synthetase. (455 aa)
ABF64665.1Acetolactate synthase, large subunit; Belongs to the TPP enzyme family. (570 aa)
ABF64667.1Aspartate kinase; Belongs to the aspartokinase family. (412 aa)
rpiARibose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. (262 aa)
ABF64694.1L-serine ammonia-lyase / 2-hydroxymethylglutarate dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family. (457 aa)
ABF64708.1Fructose-bisphosphate aldolase. (300 aa)
ABF64713.1Aminotransferase. (370 aa)
ABF64760.1Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1146 aa)
hisBImidazoleglycerol-phosphate dehydratase. (195 aa)
hisHImidazole glycerol phosphate synthase subunit hisH; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. (212 aa)
hisA21-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase. (240 aa)
hisFImidazole glycerol phosphate synthase subunit hisF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. (253 aa)
hisEphosphoribosyl-ATP pyrophosphatase. (105 aa)
prsRibose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. (340 aa)
ABF64832.1Prephenate dehydrogenase. (310 aa)
hisCHistidinol phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (362 aa)
ABF64896.1Homoserine dehydrogenase. (428 aa)
leuA2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. (527 aa)
ilvCKetol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. (340 aa)
ABF65046.1Ribose-5-phosphate isomerase. (149 aa)
ABF65062.1L-threonine synthase. (463 aa)
talTransaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily. (217 aa)
ABF65126.1Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating); Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (329 aa)
ilvDDihydroxyacid dehydratase; Belongs to the IlvD/Edd family. (614 aa)
leuC3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (467 aa)
leuD3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. (201 aa)
ABF65248.1Pyruvate kinase; Belongs to the pyruvate kinase family. (481 aa)
ABF65286.1Prephenate dehydratase. (276 aa)
ABF65313.1Aminotransferase; classes I and II. (390 aa)
ABF65338.1Chorismate mutase. (102 aa)
ABF65367.1Aromatic amino acid aminotransferase. (394 aa)
ABF65432.1Pyridoxal-5'-phosphate-dependent enzyme beta subunit. (321 aa)
gpmIPhosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. (506 aa)
ABF65515.1L-glutamine synthetase. (450 aa)
dapFDiaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. (275 aa)
aroCChorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. (370 aa)
ABF65554.1Glutamate synthase (NADPH) small subunit. (480 aa)
ABF65555.1Glutamate synthase (NADPH) large subunit. (1510 aa)
aroEShikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). (276 aa)
argGArgininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. (407 aa)
ilvAL-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. (408 aa)
argJGlutamate N-acetyltransferase / N-acetylglutamate synthase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family. (408 aa)
ilvEBranched chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (288 aa)
dapE1Succinyldiaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. (381 aa)
dapD2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family. (296 aa)
ABF65743.1L-threonine ammonia-lyase. (317 aa)
ABF65751.1Phosphoserine phosphatase. (291 aa)
ABF65752.1Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. (381 aa)
ABF65753.1D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (531 aa)
Your Current Organism:
Ruegeria sp. TM1040
NCBI taxonomy Id: 292414
Other names: R. sp. TM1040, Silicibacter sp. TM1040
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