(66 nodes) Mixed, incl. Type 1 protein exporter, and ABC transporter-like, ATP-binding domain network (Symbiobacterium thermophilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	STH1425	Diaminopimelate dehydrogenase; Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate. (299 aa)
	STH1426	ABC transporter ATP-binding protein. (582 aa)
	STH1427	ABC transporter ATP-binding protein. (590 aa)
	STH162	Putative hydrolase. (536 aa)
	STH1635	Conserved hypothetical protein. (393 aa)
	STH1701	Hypothetical protein. (223 aa)
	STH1702	Putative dolichyl-phosphate mannose synthase. (372 aa)
	STH1704	ABC transporter ATP-binding protein. (271 aa)
	STH1705	Conserved hypothetical protein. (411 aa)
	STH1706	Hypothetical protein. (73 aa)
	STH1737	Conserved hypothetical protein. (162 aa)
	STH1738	Aluminum resistance protein. (424 aa)
	STH1739	Conserved hypothetical protein. (66 aa)
	STH1740	Hypothetical protein. (106 aa)
	STH1741	RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (176 aa)
	STH1742	ABC transporter permease protein. (278 aa)
	STH1743	ABC transporter ATP-binding protein. (305 aa)
	STH1744	Putative transcription elongation factor. (154 aa)
	spoVK	Stage V sporulation protein K. (333 aa)
	STH1816	ABC transporter ATP-binding protein. (263 aa)
	STH1974	ABC transporter ATP-binding protein variant. (174 aa)
	STH1975	ABC transporter ATP-binding protein variant. (123 aa)
	STH2015	ABC transporter ATP-binding protein. (620 aa)
	STH2016	ABC transporter ATP-binding protein. (575 aa)
	STH2017	MarR family transcriptional regulator. (154 aa)
	STH2018	Hypothetical protein. (93 aa)
	STH2019	Hypothetical protein. (76 aa)
	STH2020	Spore coat protein F. (99 aa)
	STH2074	ABC transporter permease protein. (245 aa)
	STH2075	ABC transporter ATP-binding protein. (235 aa)
	STH2076	Putative transcriptional regulator. (178 aa)
	STH2077	Conserved hypothetical protein. (154 aa)
	STH2107	Conserved hypothetical protein. (253 aa)
	STH2108	ABC transporter ATP-binding protein. (296 aa)
	STH2109	Conserved hypothetical protein. (746 aa)
	STH2110	Conserved hypothetical protein. (335 aa)
	STH2111	Conserved hypothetical protein. (138 aa)
	STH215	Conserved hypothetical protein. (207 aa)
	STH216	Conserved hypothetical protein. (71 aa)
	STH217	Conserved hypothetical protein. (551 aa)
	STH218	ABC transporter ATP-binding protein. (240 aa)
	STH2577	ABC transporter ATP-binding protein variant. (86 aa)
	STH2588	Putative pyrroline-5-carboxylate reductase. (232 aa)
	STH2722	Hypothetical protein. (129 aa)
	STH2723	ABC transporter ATP-binding protein. (599 aa)
	STH2724	ABC transporter ATP-binding protein. (603 aa)
	STH452	ABC transporter ATP-binding protein. (576 aa)
	STH453	ABC transporter ATP-binding protein. (579 aa)
	STH632	ABC transporter ATP-binding protein. (597 aa)
	STH633	ABC transporter ATP-binding protein. (630 aa)
	STH647	ABC transporter permease protein. (367 aa)
	STH648	ABC transporter ATP-binding protein. (319 aa)
	STH688	Conserved domain protein. (621 aa)
	STH689	ABC transporter ATP-binding protein. (236 aa)
	STH694	ABC transporter ATP-binding protein. (328 aa)
	STH695	ABC transporter ATP-binding protein. (282 aa)
	STH696	ABC transporter permease protein. (231 aa)
	STH697	Conserved hypothetical protein. (373 aa)
	STH698	Conserved hypothetical protein; Belongs to the UPF0312 family. (220 aa)
	STH700	Putative low temperature requirement C protein. (160 aa)
	STH728	Conserved hypothetical protein. (301 aa)
	STH827	Haloacid dehalogenase-like hydrolase. (257 aa)
	STH828	Putative Xaa-Pro dipeptidase; Belongs to the peptidase M24B family. (421 aa)
	STH887	Conserved domain protein. (598 aa)
	STH888	ABC-transporter ATP-binding protein. (246 aa)
	STH889	Hypothetical protein. (206 aa)

Your Current Organism:

Symbiobacterium thermophilum

NCBI taxonomy Id: 292459
Other names: S. thermophilum IAM 14863, Symbiobacterium thermophilum IAM 14863, Symbiobacterium thermophilum str. IAM 14863, Symbiobacterium thermophilum strain IAM 14863

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
STH1425	STH1426	STH1425	STH1426	Diaminopimelate dehydrogenase; Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate.	ABC transporter ATP-binding protein.	0.561
STH1425	STH1427	STH1425	STH1427	Diaminopimelate dehydrogenase; Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate.	ABC transporter ATP-binding protein.	0.561
STH1426	STH1425	STH1426	STH1425	ABC transporter ATP-binding protein.	Diaminopimelate dehydrogenase; Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate.	0.561
STH1426	STH1427	STH1426	STH1427	ABC transporter ATP-binding protein.	ABC transporter ATP-binding protein.	0.849
STH1426	STH1975	STH1426	STH1975	ABC transporter ATP-binding protein.	ABC transporter ATP-binding protein variant.	0.630
STH1426	STH2577	STH1426	STH2577	ABC transporter ATP-binding protein.	ABC transporter ATP-binding protein variant.	0.655
STH1426	spoVK	STH1426	STH1745	ABC transporter ATP-binding protein.	Stage V sporulation protein K.	0.437
STH1427	STH1425	STH1427	STH1425	ABC transporter ATP-binding protein.	Diaminopimelate dehydrogenase; Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate.	0.561
STH1427	STH1426	STH1427	STH1426	ABC transporter ATP-binding protein.	ABC transporter ATP-binding protein.	0.849
STH1427	STH1704	STH1427	STH1704	ABC transporter ATP-binding protein.	ABC transporter ATP-binding protein.	0.412
STH1427	STH1974	STH1427	STH1974	ABC transporter ATP-binding protein.	ABC transporter ATP-binding protein variant.	0.609
STH1427	STH1975	STH1427	STH1975	ABC transporter ATP-binding protein.	ABC transporter ATP-binding protein variant.	0.622
STH1427	STH218	STH1427	STH218	ABC transporter ATP-binding protein.	ABC transporter ATP-binding protein.	0.456
STH1427	STH695	STH1427	STH695	ABC transporter ATP-binding protein.	ABC transporter ATP-binding protein.	0.502
STH1427	spoVK	STH1427	STH1745	ABC transporter ATP-binding protein.	Stage V sporulation protein K.	0.437
STH162	STH728	STH162	STH728	Putative hydrolase.	Conserved hypothetical protein.	0.754
STH1635	spoVK	STH1635	STH1745	Conserved hypothetical protein.	Stage V sporulation protein K.	0.535
STH1701	STH1702	STH1701	STH1702	Hypothetical protein.	Putative dolichyl-phosphate mannose synthase.	0.789
STH1702	STH1701	STH1702	STH1701	Putative dolichyl-phosphate mannose synthase.	Hypothetical protein.	0.789
STH1702	STH1704	STH1702	STH1704	Putative dolichyl-phosphate mannose synthase.	ABC transporter ATP-binding protein.	0.418

page 1 of 18

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About