(12 nodes) Mixed, incl. SsuA/THI5-like, and NMT1/THI5 like network (Symbiobacterium thermophilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	STH1969	ABC transporter substrate-binding protein. (353 aa)
	STH1970	ABC transporter ATP-binding protein. (258 aa)
	STH1971	ABC transporter permease protein. (249 aa)
	STH2516	ABC transporter permease protein. (253 aa)
	STH2517	ABC transporter ATP-binding protein. (241 aa)
	STH2518	Putative thiamine biosynthesis protein. (317 aa)
	STH758	ABC transporter permease protein. (258 aa)
	STH759	ABC transporter ATP-binding protein. (237 aa)
	STH760	ABC transporter substrate-binding protein. (358 aa)
	STH873	Sulfate ABC transporter substrate-binding protein. (332 aa)
	STH874	Sulfate ABC transporter ATP-binding protein. (269 aa)
	STH875	ABC transporter permease protein. (253 aa)

Your Current Organism:

Symbiobacterium thermophilum

NCBI taxonomy Id: 292459
Other names: S. thermophilum IAM 14863, Symbiobacterium thermophilum IAM 14863, Symbiobacterium thermophilum str. IAM 14863, Symbiobacterium thermophilum strain IAM 14863

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
STH1969	STH1970	ABC transporter substrate-binding protein.	ABC transporter ATP-binding protein.	0.964
STH1969	STH1971	ABC transporter substrate-binding protein.	ABC transporter permease protein.	0.938
STH1969	STH2516	ABC transporter substrate-binding protein.	ABC transporter permease protein.	0.534
STH1969	STH2517	ABC transporter substrate-binding protein.	ABC transporter ATP-binding protein.	0.459
STH1969	STH758	ABC transporter substrate-binding protein.	ABC transporter permease protein.	0.597
STH1969	STH759	ABC transporter substrate-binding protein.	ABC transporter ATP-binding protein.	0.525
STH1969	STH874	ABC transporter substrate-binding protein.	Sulfate ABC transporter ATP-binding protein.	0.459
STH1969	STH875	ABC transporter substrate-binding protein.	ABC transporter permease protein.	0.598
STH1970	STH1969	ABC transporter ATP-binding protein.	ABC transporter substrate-binding protein.	0.964
STH1970	STH1971	ABC transporter ATP-binding protein.	ABC transporter permease protein.	0.950
STH1970	STH2516	ABC transporter ATP-binding protein.	ABC transporter permease protein.	0.853
STH1970	STH2518	ABC transporter ATP-binding protein.	Putative thiamine biosynthesis protein.	0.471
STH1970	STH758	ABC transporter ATP-binding protein.	ABC transporter permease protein.	0.855
STH1970	STH760	ABC transporter ATP-binding protein.	ABC transporter substrate-binding protein.	0.471
STH1970	STH873	ABC transporter ATP-binding protein.	Sulfate ABC transporter substrate-binding protein.	0.665
STH1970	STH875	ABC transporter ATP-binding protein.	ABC transporter permease protein.	0.878
STH1971	STH1969	ABC transporter permease protein.	ABC transporter substrate-binding protein.	0.938
STH1971	STH1970	ABC transporter permease protein.	ABC transporter ATP-binding protein.	0.950
STH1971	STH2516	ABC transporter permease protein.	ABC transporter permease protein.	0.762
STH1971	STH2517	ABC transporter permease protein.	ABC transporter ATP-binding protein.	0.790

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