STRINGSTRING
GCA_000988015_02957 GCA_000988015_02957 adhT adhT glcB glcB cyoB cyoB cyoC cyoC nuoN nuoN CD943_14850 CD943_14850 CD943_14845 CD943_14845 nuoK_1 nuoK_1 nuoI nuoI nuoH_1 nuoH_1 CD943_14810 CD943_14810 nqo2 nqo2 gltA gltA ratA ratA CD943_00790 CD943_00790 CD943_01270 CD943_01270 CydX CydX cydB cydB CD943_02115 CD943_02115 mrpD mrpD CD943_09905 CD943_09905 CD943_09920 CD943_09920 CD943_09945 CD943_09945 CD943_11200 CD943_11200 petB petB CD943_04215 CD943_04215 ctaE ctaE ctaDII ctaDII CD943_05565 CD943_05565 ubiE ubiE CD943_07885 CD943_07885 sucD sucD sucC sucC mdh mdh sdhC sdhC CD943_08180 CD943_08180 CD943_08185 CD943_08185 CD943_08190 CD943_08190 acnA acnA fumC fumC GCA_000988015_02958 GCA_000988015_02958 GCA_000988015_02959 GCA_000988015_02959 GCA_000988015_02960 GCA_000988015_02960 GCA_000988015_02962 GCA_000988015_02962 ppc ppc
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GCA_000988015_02957Unannotated protein. (452 aa)
adhTUnannotated protein. (344 aa)
glcBUnannotated protein; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. (725 aa)
cyoBUnannotated protein; Belongs to the heme-copper respiratory oxidase family. (670 aa)
cyoCUnannotated protein. (214 aa)
nuoNUnannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (480 aa)
CD943_14850Unannotated protein. (495 aa)
CD943_14845Unannotated protein. (679 aa)
nuoK_1Unannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (102 aa)
nuoIUnannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (163 aa)
nuoH_1Unannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. (358 aa)
CD943_14810Unannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (681 aa)
nqo2Unannotated protein. (224 aa)
gltAUnannotated protein; Belongs to the citrate synthase family. (433 aa)
ratAUnannotated protein. (150 aa)
CD943_00790Unannotated protein; Belongs to the UPF0312 family. (435 aa)
CD943_01270Unannotated protein. (180 aa)
CydXUnannotated protein. (39 aa)
cydBUnannotated protein. (382 aa)
CD943_02115Unannotated protein. (521 aa)
mrpDUnannotated protein. (531 aa)
CD943_09905Unannotated protein. (263 aa)
CD943_09920Unannotated protein. (238 aa)
CD943_09945Unannotated protein; Belongs to the heme-copper respiratory oxidase family. (848 aa)
CD943_11200Unannotated protein. (356 aa)
petBUnannotated protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (432 aa)
CD943_04215Unannotated protein; Accepts electrons from ETF and reduces ubiquinone. (586 aa)
ctaEUnannotated protein. (292 aa)
ctaDIIUnannotated protein; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (548 aa)
CD943_05565Unannotated protein; Belongs to the isocitrate and isopropylmalate dehydrogenases family. (406 aa)
ubiEUnannotated protein; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). (261 aa)
CD943_07885Unannotated protein. (1006 aa)
sucDUnannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (300 aa)
sucCUnannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (396 aa)
mdhUnannotated protein; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. (320 aa)
sdhCUnannotated protein. (153 aa)
CD943_08180Unannotated protein. (131 aa)
CD943_08185Unannotated protein; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (594 aa)
CD943_08190Unannotated protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (265 aa)
acnAUnannotated protein; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (901 aa)
fumCUnannotated protein; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (463 aa)
GCA_000988015_02958Unannotated protein. (486 aa)
GCA_000988015_02959Unannotated protein. (631 aa)
GCA_000988015_02960Unannotated protein. (103 aa)
GCA_000988015_02962Unannotated protein. (299 aa)
ppcUnannotated protein; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family. (901 aa)
Your Current Organism:
Brevundimonas diminuta
NCBI taxonomy Id: 293
Other names: AJ 2067, ATCC 11568, B. diminuta, BCRC 11894, Bacterium parvulum, CCEB 513, CCRC 11894, CCRC:11894, CECT 317, CIP 63.27, DSM 7234, IAM 12691, IFO 12697, IMET 10409, JCM 2788, LMG 2088, LMG 2089, LMG:2088, LMG:2089, NBRC 12697, NCAIM B.01118, NCCB 76050, NCIB 9393, NCIMB 9393, NCTC 8545, Pseudomonas diminuta
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