31 items (Clostridium cellulosi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CCDG5_0071	ABC transporter inner membrane protein; High confidence in function and specificity. (288 aa)
	CCDG5_0072	ABC transporter inner membrane protein; High confidence in function and specificity. (294 aa)
	CCDG5_0073	Extracellular solute-binding protein; High confidence in function and specificity. (430 aa)
	yurJ	Putative ABC transporter ATP-binding protein YurJ; High confidence in function and specificity; Belongs to the ABC transporter superfamily. (376 aa)
	malK	Trehalose/maltose import ATP-binding protein MalK; High confidence in function and specificity; Belongs to the ABC transporter superfamily. (373 aa)
	CCDG5_0806	Sugar ABC transporter periplasmic protein; High confidence in function and specificity. (434 aa)
	CCDG5_0807	Sugar ABC transporter permease; High confidence in function and specificity. (294 aa)
	CCDG5_0808	Sugar ABC transporter permease; High confidence in function and specificity. (280 aa)
	CCDG5_0817	Binding-protein-dependent transport system inner membrane protein; High confidence in function and specificity. (277 aa)
	CCDG5_0818	Hypothetical protein; High confidence in function and specificity. (297 aa)
	CCDG5_0819	Hypothetical protein; High confidence in function and specificity. (429 aa)
	araQ1	L-arabinose transport system permease protein AraQ; High confidence in function and specificity. (282 aa)
	araP	L-arabinose transport system permease protein AraP; High confidence in function and specificity. (309 aa)
	araN	Putative arabinose-binding protein; High confidence in function and specificity. (439 aa)
	CCDG5_1258	ABC transporter permease; High confidence in function and specificity. (443 aa)
	CCDG5_1259	ABC transporter permease; High confidence in function and specificity. (274 aa)
	CCDG5_1260	Hypothetical protein; High confidence in function and specificity. (423 aa)
	CCDG5_1280	Putative secreted protein. (438 aa)
	CCDG5_1602	ABC transporter; High confidence in function and specificity. (285 aa)
	CCDG5_1603	ABC transporter; High confidence in function and specificity. (290 aa)
	CCDG5_1604	Extracellular solute-binding protein; High confidence in function and specificity. (438 aa)
	CCDG5_1616	Hypothetical protein; High confidence in function and specificity. (443 aa)
	yesP	Putative ABC transporter permease protein YesP; High confidence in function and specificity. (298 aa)
	CCDG5_1618	Hypothetical protein; High confidence in function and specificity. (284 aa)
	araQ3	L-arabinose transport system permease protein AraQ; High confidence in function and specificity. (286 aa)
	CCDG5_1943	Hypothetical protein; Family membership. (68 aa)
	CCDG5_1944	Transport protein; High confidence in function and specificity. (227 aa)
	CCDG5_1945	Family 1 extracellular solute-binding protein; High confidence in function and specificity. (446 aa)
	CCDG5_1989	Hypothetical protein; Family membership. (276 aa)
	CCDG5_1990	Binding-protein-dependent transport system inner membrane protein; High confidence in function and specificity. (295 aa)
	CCDG5_1991	Putative secreted protein. (452 aa)

Your Current Organism:

Clostridium cellulosi

NCBI taxonomy Id: 29343
Other names: [. cellulosi, [Clostridium] cellulosi

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCDG5_0071	CCDG5_0072	CCDG5_0071	CCDG5_0072	ABC transporter inner membrane protein; High confidence in function and specificity.	ABC transporter inner membrane protein; High confidence in function and specificity.	0.941
CCDG5_0071	CCDG5_0073	CCDG5_0071	CCDG5_0073	ABC transporter inner membrane protein; High confidence in function and specificity.	Extracellular solute-binding protein; High confidence in function and specificity.	0.811
CCDG5_0071	CCDG5_0806	CCDG5_0071	CCDG5_0806	ABC transporter inner membrane protein; High confidence in function and specificity.	Sugar ABC transporter periplasmic protein; High confidence in function and specificity.	0.705
CCDG5_0071	CCDG5_0807	CCDG5_0071	CCDG5_0807	ABC transporter inner membrane protein; High confidence in function and specificity.	Sugar ABC transporter permease; High confidence in function and specificity.	0.858
CCDG5_0071	CCDG5_0818	CCDG5_0071	CCDG5_0818	ABC transporter inner membrane protein; High confidence in function and specificity.	Hypothetical protein; High confidence in function and specificity.	0.858
CCDG5_0071	CCDG5_0819	CCDG5_0071	CCDG5_0819	ABC transporter inner membrane protein; High confidence in function and specificity.	Hypothetical protein; High confidence in function and specificity.	0.641
CCDG5_0071	CCDG5_1258	CCDG5_0071	CCDG5_1258	ABC transporter inner membrane protein; High confidence in function and specificity.	ABC transporter permease; High confidence in function and specificity.	0.627
CCDG5_0071	CCDG5_1280	CCDG5_0071	CCDG5_1280	ABC transporter inner membrane protein; High confidence in function and specificity.	Putative secreted protein.	0.470
CCDG5_0071	CCDG5_1603	CCDG5_0071	CCDG5_1603	ABC transporter inner membrane protein; High confidence in function and specificity.	ABC transporter; High confidence in function and specificity.	0.858
CCDG5_0071	CCDG5_1604	CCDG5_0071	CCDG5_1604	ABC transporter inner membrane protein; High confidence in function and specificity.	Extracellular solute-binding protein; High confidence in function and specificity.	0.600
CCDG5_0071	CCDG5_1616	CCDG5_0071	CCDG5_1616	ABC transporter inner membrane protein; High confidence in function and specificity.	Hypothetical protein; High confidence in function and specificity.	0.463
CCDG5_0071	CCDG5_1943	CCDG5_0071	CCDG5_1943	ABC transporter inner membrane protein; High confidence in function and specificity.	Hypothetical protein; Family membership.	0.401
CCDG5_0071	CCDG5_1944	CCDG5_0071	CCDG5_1944	ABC transporter inner membrane protein; High confidence in function and specificity.	Transport protein; High confidence in function and specificity.	0.821
CCDG5_0071	CCDG5_1990	CCDG5_0071	CCDG5_1990	ABC transporter inner membrane protein; High confidence in function and specificity.	Binding-protein-dependent transport system inner membrane protein; High confidence in function and specificity.	0.856
CCDG5_0071	CCDG5_1991	CCDG5_0071	CCDG5_1991	ABC transporter inner membrane protein; High confidence in function and specificity.	Putative secreted protein.	0.715
CCDG5_0071	araP	CCDG5_0071	CCDG5_1109	ABC transporter inner membrane protein; High confidence in function and specificity.	L-arabinose transport system permease protein AraP; High confidence in function and specificity.	0.802
CCDG5_0071	malK	CCDG5_0071	CCDG5_0422	ABC transporter inner membrane protein; High confidence in function and specificity.	Trehalose/maltose import ATP-binding protein MalK; High confidence in function and specificity; Belongs to the ABC transporter superfamily.	0.923
CCDG5_0071	yesP	CCDG5_0071	CCDG5_1617	ABC transporter inner membrane protein; High confidence in function and specificity.	Putative ABC transporter permease protein YesP; High confidence in function and specificity.	0.848
CCDG5_0071	yurJ	CCDG5_0071	CCDG5_0112	ABC transporter inner membrane protein; High confidence in function and specificity.	Putative ABC transporter ATP-binding protein YurJ; High confidence in function and specificity; Belongs to the ABC transporter superfamily.	0.959
CCDG5_0072	CCDG5_0071	CCDG5_0072	CCDG5_0071	ABC transporter inner membrane protein; High confidence in function and specificity.	ABC transporter inner membrane protein; High confidence in function and specificity.	0.941