STRINGSTRING
Amet_0508 Amet_0508 Amet_0509 Amet_0509 Amet_2367 Amet_2367 Amet_2368 Amet_2368 Amet_2369 Amet_2369 Amet_2370 Amet_2370 Amet_2371 Amet_2371 Amet_2372 Amet_2372 Amet_2373 Amet_2373 Amet_2374 Amet_2374
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Amet_0508KEGG: tte:TTE1235 hypothetical protein. (104 aa)
Amet_0509PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; KEGG: tte:TTE1236 threonine synthase. (471 aa)
Amet_2367PFAM: dihydrodipicolinate reductase; KEGG: tte:TTE1234 hypothetical protein. (348 aa)
Amet_2368KEGG: tte:TTE1235 hypothetical protein. (104 aa)
Amet_2369PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; KEGG: tte:TTE1236 threonine synthase. (475 aa)
Amet_2370KEGG: tte:TTE1237 hypothetical protein. (121 aa)
Amet_2371PFAM: cobalamin B12-binding domain protein; D-Lysine 5,6-aminomutase alpha subunit; KEGG: tte:TTE1238 methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding). (736 aa)
Amet_2372KEGG: tte:TTE1239 methylaspartate mutase. (454 aa)
Amet_2373PFAM: alanine racemase domain protein; KEGG: ppr:PBPRB0280 hypothetical protein. (364 aa)
Amet_2374Hypothetical protein. (336 aa)
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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