STRINGSTRING
Amet_0317 Amet_0317 Amet_0318 Amet_0318 Amet_0697 Amet_0697 Amet_1254 Amet_1254 Amet_2023 Amet_2023 Amet_2080 Amet_2080 Amet_2367 Amet_2367 Amet_4246 Amet_4246 Amet_4247 Amet_4247 Amet_4317 Amet_4317 Amet_4338 Amet_4338 Amet_4548 Amet_4548 Amet_4549 Amet_4549 Amet_4552 Amet_4552 Amet_4553 Amet_4553 Amet_4630 Amet_4630
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Amet_0317KEGG: tte:TTE0718 acyl-CoA hydrolase. (129 aa)
Amet_0318PFAM: protein of unknown function DUF849; KEGG: rfr:Rfer_3885 protein of unknown function DUF849. (270 aa)
Amet_0697TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: cac:CAC1427 4-aminobutyrate aminotransferase (PLP-dependent); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (441 aa)
Amet_1254TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ayw:AYWB_139 dihydrolipoamide dehydrogenase. (457 aa)
Amet_2023TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: chy:CHY_0713 alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase. (457 aa)
Amet_2080PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pen:PSEEN0400 amidohydrolase, carbon-nitrogen family. (269 aa)
Amet_2367PFAM: dihydrodipicolinate reductase; KEGG: tte:TTE1234 hypothetical protein. (348 aa)
Amet_4246TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; KEGG: tte:TTE0721 Acyl-CoA:acetate CoA transferase beta subunit. (220 aa)
Amet_4247TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; KEGG: spa:M6_Spy1391 acetate CoA-transferase alpha subunit. (217 aa)
Amet_4317PFAM: aminotransferase class-III; KEGG: tte:TTE2339 PLP-dependent aminotransferases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (473 aa)
Amet_4338TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: bha:BH3316 succinate-semialdehyde dehydrogenase. (497 aa)
Amet_4548PFAM: cobalamin B12-binding domain protein; KEGG: tte:TTE0727 D-lysine 5,6-aminomutase beta subunit. (251 aa)
Amet_4549PFAM: D-Lysine 5,6-aminomutase alpha subunit; KEGG: tte:TTE0726 D-lysine 5,6-aminomutase alpha subunit. (518 aa)
Amet_4552TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: ctc:CTC00890 L-lysine 2,3-aminomutase. (414 aa)
Amet_4553KEGG: pgi:PG1069 alcohol dehydrogenase, zinc-containing, putative. (345 aa)
Amet_4630TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: ctc:CTC00312 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (392 aa)
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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