(10 nodes) Mixed, incl. Pentose transmembrane transport, and D-ribose catabolic process network (Pseudomonas fluorescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rbsB_1	D-ribose-binding periplasmic protein precursor. (318 aa)
	mglA_2	Galactose/methyl galactoside import ATP-binding protein MglA. (517 aa)
	rbsC_1	Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family. (325 aa)
	purR	HTH-type transcriptional repressor PurR. (339 aa)
	rbsK	Ribokinase. (305 aa)
	rbsD	D-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (134 aa)
	rihA	Pyrimidine-specific ribonucleoside hydrolase RihA; Belongs to the IUNH family. (342 aa)
	rbsC_2	Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family. (323 aa)
	araG	Arabinose import ATP-binding protein AraG; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family. (514 aa)
	araF	L-arabinose-binding periplasmic protein precursor. (334 aa)

Your Current Organism:

Pseudomonas fluorescens

NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
araF	araG	SRM1_04089	SRM1_04088	L-arabinose-binding periplasmic protein precursor.	Arabinose import ATP-binding protein AraG; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.	0.920
araF	mglA_2	SRM1_04089	SRM1_02078	L-arabinose-binding periplasmic protein precursor.	Galactose/methyl galactoside import ATP-binding protein MglA.	0.748
araF	rbsB_1	SRM1_04089	SRM1_02077	L-arabinose-binding periplasmic protein precursor.	D-ribose-binding periplasmic protein precursor.	0.421
araF	rbsC_1	SRM1_04089	SRM1_02079	L-arabinose-binding periplasmic protein precursor.	Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.	0.790
araF	rbsC_2	SRM1_04089	SRM1_04087	L-arabinose-binding periplasmic protein precursor.	Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.	0.952
araF	rbsD	SRM1_04089	SRM1_02082	L-arabinose-binding periplasmic protein precursor.	D-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.	0.783
araG	araF	SRM1_04088	SRM1_04089	Arabinose import ATP-binding protein AraG; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.	L-arabinose-binding periplasmic protein precursor.	0.920
araG	purR	SRM1_04088	SRM1_02080	Arabinose import ATP-binding protein AraG; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.	HTH-type transcriptional repressor PurR.	0.566
araG	rbsB_1	SRM1_04088	SRM1_02077	Arabinose import ATP-binding protein AraG; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.	D-ribose-binding periplasmic protein precursor.	0.936
araG	rbsC_1	SRM1_04088	SRM1_02079	Arabinose import ATP-binding protein AraG; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.	Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.	0.972
araG	rbsC_2	SRM1_04088	SRM1_04087	Arabinose import ATP-binding protein AraG; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.	Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.	0.996
araG	rbsD	SRM1_04088	SRM1_02082	Arabinose import ATP-binding protein AraG; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.	D-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.	0.926
araG	rbsK	SRM1_04088	SRM1_02081	Arabinose import ATP-binding protein AraG; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.	Ribokinase.	0.691
mglA_2	araF	SRM1_02078	SRM1_04089	Galactose/methyl galactoside import ATP-binding protein MglA.	L-arabinose-binding periplasmic protein precursor.	0.748
mglA_2	purR	SRM1_02078	SRM1_02080	Galactose/methyl galactoside import ATP-binding protein MglA.	HTH-type transcriptional repressor PurR.	0.915
mglA_2	rbsB_1	SRM1_02078	SRM1_02077	Galactose/methyl galactoside import ATP-binding protein MglA.	D-ribose-binding periplasmic protein precursor.	0.974
mglA_2	rbsC_1	SRM1_02078	SRM1_02079	Galactose/methyl galactoside import ATP-binding protein MglA.	Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.	0.993
mglA_2	rbsC_2	SRM1_02078	SRM1_04087	Galactose/methyl galactoside import ATP-binding protein MglA.	Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.	0.981
mglA_2	rbsD	SRM1_02078	SRM1_02082	Galactose/methyl galactoside import ATP-binding protein MglA.	D-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.	0.978
mglA_2	rbsK	SRM1_02078	SRM1_02081	Galactose/methyl galactoside import ATP-binding protein MglA.	Ribokinase.	0.909

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