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lgrD lgrD phoD_1 phoD_1 CEL27794.1 CEL27794.1 CEL27795.1 CEL27795.1 lgrE lgrE CEL28594.1 CEL28594.1 lgrB_1 lgrB_1 lgrB_2 lgrB_2 lgrB_3 lgrB_3 yojI yojI pkn1 pkn1 cefD_1 cefD_1 CEL28603.1 CEL28603.1 CEL28604.1 CEL28604.1 pvdA pvdA pvdQ pvdQ CEL29656.1 CEL29656.1 bioI bioI CEL30158.1 CEL30158.1 grsA grsA CEL30468.1 CEL30468.1 dat_1 dat_1 dat_2 dat_2 lgrB_4 lgrB_4 iucB iucB CEL30931.1 CEL30931.1 cefD_2 cefD_2 CEL30933.1 CEL30933.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
lgrDLinear gramicidin synthase subunit D. (1131 aa)
phoD_1Alkaline phosphatase D precursor. (464 aa)
CEL27794.1Hypothetical protein. (246 aa)
CEL27795.1Astacin (Peptidase family M12A). (240 aa)
lgrELinear gramicidin dehydrogenase LgrE. (246 aa)
CEL28594.1Peptide synthase. (327 aa)
lgrB_1Linear gramicidin synthase subunit B. (1133 aa)
lgrB_2Linear gramicidin synthase subunit B. (2608 aa)
lgrB_3Linear gramicidin synthase subunit B. (4108 aa)
yojIABC transporter ATP-binding protein YojI. (549 aa)
pkn1Serine/threonine-protein kinase pkn1. (295 aa)
cefD_1Isopenicillin N epimerase. (428 aa)
CEL28603.1Membrane dipeptidase (Peptidase family M19). (456 aa)
CEL28604.1Hypothetical protein. (541 aa)
pvdAL-ornithine 5-monooxygenase. (444 aa)
pvdQAcyl-homoserine lactone acylase PvdQ precursor. (781 aa)
CEL29656.1NmrA-like family protein. (313 aa)
bioIBiotin biosynthesis cytochrome P450. (369 aa)
CEL30158.1Hypothetical protein. (444 aa)
grsAGramicidin S synthase 1. (531 aa)
CEL30468.1MbtH-like protein. (74 aa)
dat_1Diaminobutyrate--2-oxoglutarate aminotransferase. (123 aa)
dat_2Diaminobutyrate--2-oxoglutarate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (357 aa)
lgrB_4Linear gramicidin synthase subunit B. (4332 aa)
iucBN(6)-hydroxylysine O-acetyltransferase. (337 aa)
CEL30931.1Hypothetical protein. (78 aa)
cefD_2Isopenicillin N epimerase. (393 aa)
CEL30933.1Dioxygenase. (241 aa)
Your Current Organism:
Pseudomonas fluorescens
NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5
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