STRINGSTRING
prr_1 prr_1 ydcV_1 ydcV_1 ydcU ydcU potA_1 potA_1 potF_1 potF_1 prr_2 prr_2 gltC_2 gltC_2 serB_2 serB_2 potA_2 potA_2 cysW_2 cysW_2 cysW_3 cysW_3 CEL28424.1 CEL28424.1 CEL28425.1 CEL28425.1 phnR phnR potF_2 potF_2 ydcV_2 ydcV_2 potH_1 potH_1 potA_3 potA_3 potF_4 potF_4 CEL29415.1 CEL29415.1 potD potD potH_2 potH_2 ydcV_3 ydcV_3 potA_4 potA_4 potF_5 potF_5 ydcV_4 ydcV_4 potH_3 potH_3 potF_6 potF_6 potA_5 potA_5 ydcV_5 ydcV_5 potH_4 potH_4 potA_6 potA_6 potF_7 potF_7 potF_8 potF_8
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
prr_1Gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (474 aa)
ydcV_1Inner membrane ABC transporter permease protein YdcV. (269 aa)
ydcUInner membrane ABC transporter permease protein YdcU. (306 aa)
potA_1Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily. (345 aa)
potF_1Putrescine-binding periplasmic protein precursor. (383 aa)
prr_2Gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (495 aa)
gltC_2HTH-type transcriptional regulator GltC; Belongs to the LysR transcriptional regulatory family. (304 aa)
serB_2Phosphoserine phosphatase. (217 aa)
potA_2Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily. (329 aa)
cysW_2Sulfate transport system permease protein CysW. (266 aa)
cysW_3Sulfate transport system permease protein CysW. (281 aa)
CEL28424.1Type I phosphodiesterase / nucleotide pyrophosphatase. (268 aa)
CEL28425.1Hypothetical protein. (355 aa)
phnRPutative transcriptional regulator of 2-aminoethylphosphonate degradation operons. (237 aa)
potF_2Putrescine-binding periplasmic protein precursor. (365 aa)
ydcV_2Inner membrane ABC transporter permease protein YdcV. (291 aa)
potH_1Putrescine transport system permease protein PotH. (304 aa)
potA_3Spermidine/putrescine import ATP-binding protein PotA. (380 aa)
potF_4Putrescine-binding periplasmic protein precursor. (361 aa)
CEL29415.1Hypothetical protein. (114 aa)
potDSpermidine/putrescine-binding periplasmic protein precursor. (341 aa)
potH_2Putrescine transport system permease protein PotH. (315 aa)
ydcV_3Inner membrane ABC transporter permease protein YdcV. (269 aa)
potA_4Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily. (384 aa)
potF_5Putrescine-binding periplasmic protein precursor. (366 aa)
ydcV_4Inner membrane ABC transporter permease protein YdcV. (274 aa)
potH_3Putrescine transport system permease protein PotH. (415 aa)
potF_6Putrescine-binding periplasmic protein precursor. (347 aa)
potA_5Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (362 aa)
ydcV_5Inner membrane ABC transporter permease protein YdcV. (296 aa)
potH_4Putrescine transport system permease protein PotH. (306 aa)
potA_6Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (380 aa)
potF_7Putrescine-binding periplasmic protein precursor. (365 aa)
potF_8Putrescine-binding periplasmic protein precursor. (370 aa)
Your Current Organism:
Pseudomonas fluorescens
NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5
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