STRINGSTRING
pkn1 pkn1 fur fur ccmC ccmC ccmF ccmF yojI yojI cefD_1 cefD_1 CEL28603.1 CEL28603.1 CEL28604.1 CEL28604.1 ttgF_1 ttgF_1 macA_2 macA_2 pvdA pvdA CEL30460.1 CEL30460.1 CEL30468.1 CEL30468.1 dat_1 dat_1 dat_2 dat_2 lgrB_4 lgrB_4 iucB iucB npt npt cefD_2 cefD_2 CEL31918.1 CEL31918.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pkn1Serine/threonine-protein kinase pkn1. (295 aa)
furFerric uptake regulation protein; Belongs to the Fur family. (134 aa)
ccmCHeme exporter protein C; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. (260 aa)
ccmFCytochrome c-type biogenesis protein CcmF. (662 aa)
yojIABC transporter ATP-binding protein YojI. (549 aa)
cefD_1Isopenicillin N epimerase. (428 aa)
CEL28603.1Membrane dipeptidase (Peptidase family M19). (456 aa)
CEL28604.1Hypothetical protein. (541 aa)
ttgF_1Toluene efflux pump outer membrane protein TtgF precursor. (464 aa)
macA_2Macrolide export protein MacA. (387 aa)
pvdAL-ornithine 5-monooxygenase. (444 aa)
CEL30460.1Peptidase propeptide and YPEB domain protein. (399 aa)
CEL30468.1MbtH-like protein. (74 aa)
dat_1Diaminobutyrate--2-oxoglutarate aminotransferase. (123 aa)
dat_2Diaminobutyrate--2-oxoglutarate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (357 aa)
lgrB_4Linear gramicidin synthase subunit B. (4332 aa)
iucBN(6)-hydroxylysine O-acetyltransferase. (337 aa)
npt4'-phosphopantetheinyl transferase Npt; Belongs to the P-Pant transferase superfamily. (241 aa)
cefD_2Isopenicillin N epimerase. (393 aa)
CEL31918.1PepSY-associated TM helix. (376 aa)
Your Current Organism:
Pseudomonas fluorescens
NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.