STRINGSTRING
kdgR kdgR livJ livJ amiC_2 amiC_2 cra cra braC braC rbsB_1 rbsB_1 purR purR lpoA lpoA araF araF gntR gntR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
kdgRHTH-type transcriptional regulator KdgR. (341 aa)
livJLeu/Ile/Val/Thr-binding protein precursor. (377 aa)
amiC_2Aliphatic amidase expression-regulating protein. (421 aa)
craCatabolite repressor/activator. (331 aa)
braCLeucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor. (375 aa)
rbsB_1D-ribose-binding periplasmic protein precursor. (318 aa)
purRHTH-type transcriptional repressor PurR. (339 aa)
lpoAPenicillin-binding protein activator LpoA precursor. (603 aa)
araFL-arabinose-binding periplasmic protein precursor. (334 aa)
gntRHTH-type transcriptional regulator GntR. (343 aa)
Your Current Organism:
Pseudomonas fluorescens
NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5
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