Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| algD | mucA | SRM1_01002 | SRM1_01352 | GDP-mannose 6-dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. | Sigma factor AlgU negative regulatory protein. | 0.423 |
| algD | rpoE_1 | SRM1_01002 | SRM1_01351 | GDP-mannose 6-dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. | ECF RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.409 |
| aruC | gdhB | SRM1_04232 | SRM1_03026 | Succinylornithine transaminase/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | NAD-specific glutamate dehydrogenase. | 0.572 |
| dctA_1 | putA | SRM1_04182 | SRM1_00506 | Aerobic C4-dicarboxylate transport protein; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | Bifunctional protein PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.421 |
| dctA_1 | putP_1 | SRM1_04182 | SRM1_00507 | Aerobic C4-dicarboxylate transport protein; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | 0.532 |
| dctA_1 | uhpC | SRM1_04182 | SRM1_03521 | Aerobic C4-dicarboxylate transport protein; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | Regulatory protein UhpC. | 0.519 |
| flhF | glnG | SRM1_01556 | SRM1_00392 | Flagellar biosynthesis protein FlhF. | Nitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | 0.482 |
| flhF | ntrC | SRM1_01556 | SRM1_01520 | Flagellar biosynthesis protein FlhF. | Nitrogen assimilation regulatory protein. | 0.557 |
| gdhB | aruC | SRM1_03026 | SRM1_04232 | NAD-specific glutamate dehydrogenase. | Succinylornithine transaminase/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.572 |
| glnG | flhF | SRM1_00392 | SRM1_01556 | Nitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | Flagellar biosynthesis protein FlhF. | 0.482 |
| glnG | phoR_2 | SRM1_00392 | SRM1_05755 | Nitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | Phosphate regulon sensor protein PhoR. | 0.466 |
| glnG | rpoN | SRM1_00392 | SRM1_00904 | Nitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.896 |
| hfq | phoR_2 | SRM1_00582 | SRM1_05755 | RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Phosphate regulon sensor protein PhoR. | 0.431 |
| hfq | rpoE_1 | SRM1_00582 | SRM1_01351 | RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | ECF RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.400 |
| hfq | rpoN | SRM1_00582 | SRM1_00904 | RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.659 |
| hfq | vfr | SRM1_00582 | SRM1_05214 | RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Cyclic AMP receptor-like protein. | 0.515 |
| hpt | rpoN | SRM1_04777 | SRM1_00904 | Hypoxanthine-guanine phosphoribosyltransferase. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.409 |
| hutH_2 | hutI | SRM1_00418 | SRM1_00419 | Histidine ammonia-lyase; Belongs to the PAL/histidase family. | Imidazolonepropionase. | 0.981 |
| hutH_2 | hutU | SRM1_00418 | SRM1_00412 | Histidine ammonia-lyase; Belongs to the PAL/histidase family. | Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. | 0.993 |
| hutH_2 | yvoA_1 | SRM1_00418 | SRM1_00410 | Histidine ammonia-lyase; Belongs to the PAL/histidase family. | HTH-type transcriptional repressor YvoA. | 0.827 |
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